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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN COMPLEX WITH 4H-THIENO[3,2-B]PYRROLE-5-CARBOXYLIC ACID
 
Authors :  H. -L. Huang, J. C. Sacchettini
Date :  14 Jul 15  (Deposition) - 10 Aug 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym./Biol. Unit :  A
Keywords :  Fragment, Complex, Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Huang, I. V. Krieger, M. K. Parai, V. B. Gawandi, J. C. Sacchettini
Mycobacterium Tuberculosis Malate Synthase Structures With Fragments Reveal A Portal For Substrate/Product Exchange.
J. Biol. Chem. V. 291 27421 2016
PubMed-ID: 27738104  |  Reference-DOI: 10.1074/JBC.M116.750877
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALATE SYNTHASE G
    Chains: A
    EC Number: 2.3.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: GLCB, RV1837C, MTCY1A11.06
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid: 83332
    Other Details: DISORDERED REGIONS WITH RESIDUES 71-76, 302-311, 381- 385, 674-677, AND 728-741 NOT INCLUDED IN THE FINAL REFINEMENT.
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
14WL1Ligand/Ion4H-THIENO[3,2-B]PYROLE-5-CARBOXYLIC ACID
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:235 , HOH A:1022 , HOH A:1194binding site for residue MG A 801
2AC2SOFTWAREGLU A:434 , ASP A:462 , HOH A:968 , HOH A:995 , HOH A:1018 , HOH A:1171binding site for residue MG A 802
3AC3SOFTWAREVAL A:118 , SER A:275 , MET A:515 , THR A:517 , MET A:631 , ASP A:633 , HOH A:926 , HOH A:970 , HOH A:1003binding site for residue 4WL A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:74 -Pro A:75
2Ala A:683 -Pro A:684

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJM)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:711
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.................hhhhhh....eeeee..hhhhhhhhhh..eeehhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.....hhhhh.eeeee..eeeee....ee...hhh.eeeeeee..eeeeeeeee..eeeeeee...hhhhhh....eeeeeee...eeeee........hhhhhhhhhhhhhhhhhh..........eee.......eee....eeeee......eeeeeee....eeehhhhhhhhhhhhhhhhhh..........eeeee....hhhhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....ee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cjm A   2 TDRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDELQAQIDKWHRRRVIEPIDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGPTYNKVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDGQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIEILIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAARVLNRDRNYTAPGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFEGIMDALFTGLIAIHGLKASDINSRTGSIYIVKPKMHGPAEVAFTcELFSRVEDVLGLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGASKVPDIHDVALMEDRATLRISSQLLANWLRHGVITSADVRASLERMAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRREFKARAAE 727
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|      321       331       341       351       361       371       386       396       406   |   416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726 
                                                                                                                                                                                                                                                                                                                                     301|                                                                 380|                     410-CSO                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                      312                                                                  386
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJM)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:683 - Pro A:684   [ RasMol ]  
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 Related Entries

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UniProtKB/Swiss-Prot
        MASZ_MYCTU | P9WK17: 1n8i 1n8w 2gq3 3s9i 3s9z 3sad 3saz 3sb0 5c7v 5c9r 5c9u 5c9w 5c9x 5cah 5cak 5cbb 5cbi 5cbj 5cc3 5cc5 5cc6 5cc7 5ccz 5cew 5cjn 5drc 5dri 5dx7 5e9x 5ecv 5h8m 5h8p 5h8u 5t8g

(-) Related Entries Specified in the PDB File

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