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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MALATE SYNTHASE IN COMPLEX WITH 2-HYDROXY-4-(4-METHYL-1H-INDOL-5-YL)-4-OXOBUT-2-ENOIC ACID
 
Authors :  I. V. Krieger, H. -L. Huang, J. C. Sacchettini
Date :  20 Oct 15  (Deposition) - 26 Oct 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. L. Huang, I. V. Krieger, M. K. Parai, V. B. Gawandi, J. C. Sacchettini
Mycobacterium Tuberculosis Malate Synthase Structures With Fragments Reveal A Portal For Substrate/Product Exchange.
J. Biol. Chem. V. 291 27421 2016
PubMed-ID: 27738104  |  Reference-DOI: 10.1074/JBC.M116.750877
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALATE SYNTHASE G
    Chains: A
    EC Number: 2.3.3.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: GLCB, RV1837C, MTCY1A11.06
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15M21Ligand/Ion(~{Z})-4-(4-METHYL-1~{H}-INDOL-5-YL)-2-OXIDANYL-4-OXIDANYLIDENE-BUT-2-ENOIC ACID
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:434 , ASP A:462 , 5M2 A:802 , HOH A:932 , HOH A:988binding site for residue MG A 801
2AC2SOFTWAREVAL A:118 , ARG A:339 , GLU A:434 , GLY A:459 , PHE A:460 , LEU A:461 , ASP A:462 , MET A:515 , TRP A:541 , MET A:631 , ASP A:633 , MG A:801 , HOH A:932 , HOH A:1080binding site for residue 5M2 A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ECV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:383 -Pro A:384
2Ala A:683 -Pro A:684

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ECV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ECV)

(-) Exons   (0, 0)

(no "Exon" information available for 5ECV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.................hhhhhh....eeeee..hhhhhhhhhh..eeehhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.....hhhhh.eeeee..eeeee....ee...hhh.eeeeeee..eeeeeeeee..eeeeeee.....hhhhh...eeeeeee...eeeee........hhhhhhhhhhhhhhhhhh..........eeee.....eeee....eeeee......eeeeeee....eeehhhhhhhhhhhhhhhhhh...............eeeee....hhhhhhhhhhhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ecv A   2 TDRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDELQAQIDKWHRRRVIEPIDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGPTYNKVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDGQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIEILIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAARVLNRDRNYTAPGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFEGIMDALFTGLIAIHGLKASDVNGPLINSRTGSIYIVKPKMHGPAEVAFTCELFSRVEDVLGLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRKGTMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGASKVPDIHDVALMEDRATLRISSQLLANWLRHGVITSADVRASLERMAPLVDRQNAAYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRREFKARAAE 727
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|      321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671  ||   684       694       704       714       724   
                                                                                                                                                                                                                                                                                                                                     301|                                                                                                                                                                                                                                                                                                                                                                       674|                                                 
                                                                                                                                                                                                                                                                                                                                      312                                                                                                                                                                                                                                                                                                                                                                        678
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ECV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ECV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ECV)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MASZ_MYCTU | P9WK17: 1n8i 1n8w 2gq3 3s9i 3s9z 3sad 3saz 3sb0 5c7v 5c9r 5c9u 5c9w 5c9x 5cah 5cak 5cbb 5cbi 5cbj 5cc3 5cc5 5cc6 5cc7 5ccz 5cew 5cjm 5cjn 5drc 5dri 5dx7 5e9x 5h8m 5h8p 5h8u 5t8g

(-) Related Entries Specified in the PDB File

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