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(-) Description

Title :  CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN HSP70 NBD DOUBLE MUTANT E268Q+R272K.
 
Authors :  D. Narayanan, R. A. Engh
Date :  28 May 15  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Atp Hydrolysis Activity (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Narayanan, A. Pflug, T. Christopeit, P. Kyomuhendo, R. A. Engh
Nucleotide Binding To Variants Of The Hsp70-Nbd.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK 70 KDA PROTEIN 1A
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28B+
    Expression System Taxid469008
    Expression System VariantRIL
    Expression System Vector TypePLASMID
    GeneHSPA1A, HSPA1, HSX70
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHEAT SHOCK 70 KDA PROTEIN 1,HSP70.1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PO42Ligand/IonPHOSPHATE ION
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:13 , LYS A:71 , THR A:204 , PO4 A:402 , TRS A:404binding site for residue CL A 401
2AC2SOFTWAREGLY A:12 , THR A:13 , THR A:14 , TYR A:15 , GLY A:202 , THR A:204 , CL A:401 , TRS A:404binding site for residue PO4 A 402
3AC3SOFTWARELEU A:50 , ILE A:51 , LYS A:126binding site for residue PO4 A 403
4AC4SOFTWAREASP A:10 , GLY A:12 , LYS A:71 , GLU A:175 , ASP A:199 , GLY A:201 , VAL A:337 , GLY A:338 , VAL A:369 , CL A:401 , PO4 A:402 , HOH A:532binding site for residue TRS A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BPN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BPN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BPN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BPN)

(-) Exons   (0, 0)

(no "Exon" information available for 5BPN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhh..hhh.ee.hhhhhh.....hhhhhhhhhhh..eee....eeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh..eeeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bpn A   6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVLNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACQRAKKTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILM 381
                                    15        25        35        45        55   ||   66        76        86        96||     108       118       128       138       148       158       168       178       188|      199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379  
                                                                                59|                                  97|                                                                                     188|                                                                                                                                                                                               
                                                                                 61                                  100                                                                                      190                                                                                                                                                                                               

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BPN)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HS71A_HUMAN | P0DMV81hjo 1s3x 1xqs 2e88 2e8a 2lmg 3a8y 3atu 3atv 3ay9 3d2e 3d2f 3jxu 3lof 3q49 4io8 4j8f 4po2 4wv5 4wv7 5aqw 5aqx 5aqy 5aqz 5ar0 5bn8 5bn9 5bpl 5bpm 5gjj 5mkr 5mks

(-) Related Entries Specified in the PDB File

5bn8 5BN8 CONTAINS THE SAME PROTEIN IN THE APO FORM.
5bn9 5BN9 CONTAINS THE SINGLE MUTANT (R272K) COMPLEXED WITH ADP.
5bpl 5BPL CONTAINS THE SAME PROTEIN SINGLE MUTANT (R272K) COMPLEXED WITH ADP AND PI
5bpm 5BPM CONTAINS THE SAME PROTEIN DOUBLE MUTANT (E268Q+R272K) COMPLEXED WITH UNHYDROLYSED ATP.