Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  DEHYDRATASE DOMAIN (DH) OF A MYCOCEROSIC ACID SYNTHASE-LIKE (MAS-LIKE) PKS, CRYSTAL FORM 1
 
Authors :  D. A. Herbst, P. R. Jakob, F. Zaehringer, T. Maier
Date :  27 May 15  (Deposition) - 09 Mar 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),C (1x)
Biol. Unit 2:  B (1x),D (1x)
Biol. Unit 3:  A (1x),C (1x)
Biol. Unit 4:  B (1x),D (1x)
Keywords :  Lyase, Pks, Dehydratase, Dh, Polyketide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Herbst, R. P. Jakob, F. Zahringer, T. Maier
Mycocerosic Acid Synthase Exemplifies The Architecture Of Reducing Polyketide Synthases.
Nature V. 531 533 2016
PubMed-ID: 26976449  |  Reference-DOI: 10.1038/NATURE16993

(-) Compounds

Molecule 1 - MYCOCEROSIC ACID SYNTHASE-LIKE POLYKETIDE SYNTHASE
    Atcc: 700084
    Cell Line: MYBOBACTERIUM
    Chains: A, B, C, D
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Plasmid: PNIC28-BSA4
    Expression System Taxid: 866768
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 884-1186
    Gene: PKS5, MSMEG_4727
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155
    Synonym: MAS-LIKE PKS,POLYKETIDE SYNTHASE PKS5

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x) C (1x) 
Biological Unit 2 (1x):  B (1x) D (1x)
Biological Unit 3 (1x): A (1x) C (1x) 
Biological Unit 4 (1x):  B (1x) D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 43)

Asymmetric Unit (5, 43)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2EDO32Ligand/Ion1,2-ETHANEDIOL
3GOL5Ligand/IonGLYCEROL
4MG2Ligand/IonMAGNESIUM ION
5PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 13)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
3GOL2Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 3 (3, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO9Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5PG4-1Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:925 , GLU A:926 , ASP A:978binding site for residue MG A 1201
02AC2SOFTWARELYS A:1146 , ASP A:1148 , GLY A:1151binding site for residue EDO A 1202
03AC3SOFTWARELEU A:1141 , ARG A:1143 , ASP A:1155 , HOH A:1407 , HOH A:1440binding site for residue EDO A 1203
04AC4SOFTWAREASP A:933 , ALA A:1058binding site for residue EDO A 1204
05AC5SOFTWAREPHE A:970 , HIS A:971 , GLN A:1008 , THR A:1011binding site for residue EDO A 1205
06AC6SOFTWAREHIS A:966 , ASP A:967 , VAL A:1013 , ARG A:1015binding site for residue EDO A 1206
07AC7SOFTWAREGLU A:995 , PHE A:996 , THR A:1011 , ALA A:1012 , VAL A:1013binding site for residue EDO A 1207
08AC8SOFTWARELEU A:975 , ASP A:977 , ALA A:979 , THR A:980 , HIS A:1001 , HOH A:1311binding site for residue EDO A 1208
09AC9SOFTWARETHR A:1069 , GLU A:1072 , HOH A:1366 , GLN C:938binding site for residue EDO A 1209
10AD1SOFTWAREGLN A:1113 , ALA A:1116 , SER A:1117 , EDO A:1213 , ALA C:1025 , HOH C:1358binding site for residue EDO A 1210
11AD2SOFTWARESER A:899 , HIS A:901 , HOH A:1321 , HOH A:1423binding site for residue EDO A 1211
12AD3SOFTWAREHIS A:934 , HIS A:1055 , ASP A:1100 , PHE A:1103 , LEU A:1121binding site for residue EDO A 1212
13AD4SOFTWARELEU A:1044 , GLY A:1047 , PHE A:1048 , ILE A:1107 , GLN A:1113 , EDO A:1210 , HOH A:1391 , HOH A:1452binding site for residue EDO A 1213
14AD5SOFTWAREHIS A:934 , VAL A:941 , LEU A:942 , PRO A:943 , GLY A:944 , PHE A:970 , PRO A:1122 , HOH A:1325 , HOH A:1350 , HOH A:1417binding site for residue GOL A 1214
15AD6SOFTWAREVAL A:900 , HIS A:901 , GLY A:905 , HOH A:1339 , HOH A:1430binding site for residue CL A 1215
16AD7SOFTWAREPHE B:970 , HIS B:971 , LEU B:1123binding site for residue EDO B 1201
17AD8SOFTWAREPHE B:1103 , ILE B:1107 , LEU B:1120 , LEU B:1121 , HOH B:1305 , HOH B:1347binding site for residue EDO B 1202
18AD9SOFTWAREHIS B:934 , LEU B:942 , PRO B:943 , GLY B:944 , LEU B:1121 , PRO B:1122 , HOH B:1305binding site for residue GOL B 1203
19AE1SOFTWAREHIS C:966 , ASP C:967 , ARG C:1126 , ARG C:1127binding site for residue EDO C 1201
20AE2SOFTWAREALA C:1058 , PRO C:1082 , PRO C:1084 , LEU C:1085 , PG4 C:1212binding site for residue EDO C 1202
21AE3SOFTWAREGLY C:1061 , SER C:1063 , ALA C:1078 , VAL C:1079 , ALA C:1080 , EDO C:1206 , HOH C:1367binding site for residue EDO C 1203
22AE4SOFTWAREGLN C:912 , GLU C:916binding site for residue EDO C 1204
23AE5SOFTWAREASP C:933 , ARG C:935 , GLY C:1054 , HIS C:1055 , GLY C:1056 , HOH C:1435binding site for residue EDO C 1205
24AE6SOFTWAREVAL C:1079 , ARG C:1138 , TYR C:1139 , EDO C:1203binding site for residue EDO C 1206
25AE7SOFTWAREPRO C:914 , VAL C:988 , THR C:989 , ALA C:990 , PRO C:991 , EDO C:1208 , HOH C:1301binding site for residue EDO C 1207
26AE8SOFTWAREPRO C:914 , GLU C:915 , EDO C:1207 , HOH C:1301binding site for residue EDO C 1208
27AE9SOFTWAREPHE C:1103 , ILE C:1107 , LEU C:1120 , LEU C:1121 , PRO C:1122 , HOH C:1318 , HOH C:1366binding site for residue EDO C 1209
28AF1SOFTWAREHIS C:934 , VAL C:941 , LEU C:942 , PRO C:943 , GLY C:944 , PHE C:970 , PRO C:1122 , HOH C:1341 , HOH C:1424binding site for residue GOL C 1210
29AF2SOFTWAREHIS C:966binding site for residue CL C 1211
30AF3SOFTWAREGLY C:1083 , PRO C:1084 , EDO C:1202 , THR D:989 , ALA D:990 , PRO D:991 , EDO D:1208binding site for residue PG4 C 1212
31AF4SOFTWAREHOH C:1457 , ASP D:972 , HOH D:1331 , HOH D:1350 , HOH D:1372 , HOH D:1454binding site for residue MG D 1201
32AF5SOFTWARELYS D:969 , HIS D:971 , ARG D:1009 , THR D:1011binding site for residue EDO D 1202
33AF6SOFTWARETRP D:983 , SER D:985 , GLY D:997 , VAL D:998 , GLU D:999binding site for residue EDO D 1203
34AF7SOFTWAREVAL D:1039 , HOH D:1338binding site for residue EDO D 1204
35AF8SOFTWARELEU D:1141 , ARG D:1143 , ASP D:1155 , GLU D:1157 , HOH D:1451binding site for residue EDO D 1205
36AF9SOFTWAREASP D:967 , LYS D:969 , THR D:1011 , ALA D:1012binding site for residue EDO D 1206
37AG1SOFTWARELEU D:1032 , ALA D:1033 , HIS D:1035 , PRO D:1036 , TYR D:1066binding site for residue EDO D 1207
38AG2SOFTWAREPG4 C:1212 , PRO D:914 , VAL D:988 , THR D:989 , ALA D:990 , PRO D:991binding site for residue EDO D 1208
39AG3SOFTWAREPHE D:970 , HIS D:971 , MET D:973 , LEU D:1123 , GLY D:1177 , GOL D:1212 , HOH D:1366 , HOH D:1432binding site for residue EDO D 1209
40AG4SOFTWAREILE D:1107 , LEU D:1120 , LEU D:1121 , PRO D:1122 , HOH D:1314binding site for residue EDO D 1210
41AG5SOFTWAREHIS D:966 , ASP D:967 , ARG D:1126 , ARG D:1127binding site for residue GOL D 1211
42AG6SOFTWAREHIS D:934 , LEU D:942 , PRO D:943 , GLY D:944 , LEU D:1121 , PRO D:1122 , EDO D:1209 , HOH D:1314binding site for residue GOL D 1212
43AG7SOFTWAREHIS D:966 , ARG D:1015binding site for residue CL D 1213

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BP2)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:913 -Pro A:914
2Glu B:913 -Pro B:914
3Glu C:913 -Pro C:914
4Glu D:913 -Pro D:914

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BP2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BP2)

(-) Exons   (0, 0)

(no "Exon" information available for 5BP2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee......eeeeeee.....hhhhh.eee..ee..hhhhhhhhhhhhhhhhhh...eeeeee...........eeeeeeeeee..eeeeeeeeee..eeeeeeeeeee...........hhhhhhhhh.eeeehhhhhhhhhhh.eee.hhhh.eeeeee......eeeeee..hhhhh........hhhhhhhhhhhhh.hhhhhhhh....eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5bp2 A  896 PSVSVHPLLGSHVVLPQEPEEHLWQGDVGTEAHPWLSDHRVHQVAVLPGAAYCEMALAAVTPVLGDTGEVHDLKFHDMLLLDDATPVWVSAAVTAPGTAEFGVETHQSGDRTQRATAVLRGDVDAERPAAHSIDALLAAHPNRVDGDELRAGFGTVGIGHGAAFAGLSEAYVATAAEPTVVAAVALPGPLRSGQRGYTVHPALLDACFQSVIAHPEVQNIASGMLLPLGVRRLRAYGSTRNVRYCLSRIVKADSFGVEADLELLDADGTVLLSAMGLQLGTGNSD 1180
                                   905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175     


Chain B from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeee......eeeeeee.....hhhhh.eee..ee..hhhhhhhhhhhhhhhhhh...eeeeeee..........eeeeeeeeee..eeeeeeeeee..eeeeeeeeeee...........hhhhhhhh..eeeehhhhhhhhhhh.eee.hhhh.eeeeee......eeeeee..hhhhhh.......hhhhhhhhhhhh..hhhhhhhh....eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5bp2 B  894 GVPSVSVHPLLGSHVVLPQEPEEHLWQGDVGTEAHPWLSDHRVHQVAVLPGAAYCEMALAAVTPVLGDTGEVHDLKFHDMLLLDDATPVWVSAAVTAPGTAEFGVETHQSGDRTQRATAVLRGDVDAERPAAHSIDALLAAHPNRVDGDELRAGFGTVGIGHGAAFAGLSEAYVATAAEPTVVAAVALPGPLRSGQRGYTVHPALLDACFQSVIAHPEVQNIASGMLLPLGVRRLRAYGSTRNVRYCLSRIVKADSFGVEADLELLDADGTVLLSAMGLQLGTG 1177
                                   903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173    


Chain C from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeee......eeeeeee.....hhhhh.eee..ee..hhhhhhhhhhhhhhhhhh...eeeeeee..........eeeeeeeeee..eeeeeeeee....eeeeeeeeee...........hhhhhhhhh.eeeehhhhhhhhhhh.eee.hhhh.eeeeee......eeeeee..hhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhh....eeeeeeeeee........eeeeeeeeee..eeeeeeeee.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5bp2 C  895 VPSVSVHPLLGSHVVLPQEPEEHLWQGDVGTEAHPWLSDHRVHQVAVLPGAAYCEMALAAVTPVLGDTGEVHDLKFHDMLLLDDATPVWVSAAVTAPGTAEFGVETHQSGDRTQRATAVLRGDVDAERPAAHSIDALLAAHPNRVDGDELRAGFGTVGIGHGAAFAGLSEAYVATAAEPTVVAAVALPGPLRSGQRGYTVHPALLDACFQSVIAHPEVQNIASGMLLPLGVRRLRAYGSTRNVRYCLSRIVKADSFGVEADLELLDADGTVLLSAMGLQLGT 1176
                                   904       914       924       934       944       954       964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174  


Chain D from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee......eeeeeee.....hhhhh.eee..ee..hhhhhhhhhhhhhhhhhh...eeeeee...........eeeeeeeeee..eeeeeeeeee..eeeeeeeeeee...........hhhhhhhh..eeeehhhhhhhhhhh.eee.hhhh.eeeeee......eeeeee..hhhhh........hhhhhhhhhhhhh.hhhhhhhh....eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5bp2 D  895 VPSVSVHPLLGSHVVLPQEPEEHLWQGDVGTEAHPWLSDHRVHQVAVLPGAAYCEMALAAVTPVLGDTGEVHDLKFHDMLLLDDATPVWVSAAVTAPGTAEFGVETHQSGDRTQRATAVLRGDVDAERPAAHSIDALLAAHPNRVDGDELRAGFGTVGIGHGAAFAGLSEAYVATAAEPTVVAAVALPGPLRSGQRGYTVHPALLDACFQSVIAHPEVQNIASGMLLPLGVRRLRAYGSTRNVRYCLSRIVKADSFGVEADLELLDADGTVLLSAMGLQLGTG 1177
                                   904       914       924       934       944       954       964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BP2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BP2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BP2)

(-) Gene Ontology  (8, 14)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
    AF6  [ RasMol ]  +environment [ RasMol ]
    AF7  [ RasMol ]  +environment [ RasMol ]
    AF8  [ RasMol ]  +environment [ RasMol ]
    AF9  [ RasMol ]  +environment [ RasMol ]
    AG1  [ RasMol ]  +environment [ RasMol ]
    AG2  [ RasMol ]  +environment [ RasMol ]
    AG3  [ RasMol ]  +environment [ RasMol ]
    AG4  [ RasMol ]  +environment [ RasMol ]
    AG5  [ RasMol ]  +environment [ RasMol ]
    AG6  [ RasMol ]  +environment [ RasMol ]
    AG7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:913 - Pro A:914   [ RasMol ]  
    Glu B:913 - Pro B:914   [ RasMol ]  
    Glu C:913 - Pro C:914   [ RasMol ]  
    Glu D:913 - Pro D:914   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5bp2
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PKS5_MYCS2 | A0R1E8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.3.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PKS5_MYCS2 | A0R1E8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PKS5_MYCS2 | A0R1E8: 5bp1 5bp3 5bp4

(-) Related Entries Specified in the PDB File

5bp3 5bp4 5bp5