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(-) Description

Title :  CRYSTAL STRUCTURE OF HA17-HA33-IPT
 
Authors :  K. Lee, K. Lam, R. Jin
Date :  27 May 15  (Deposition) - 02 Sep 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Botulinum Neurotoxin A, Hemagglutinin, Iptg, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Lee, K. H. Lam, A. M. Kruel, S. Mahrhold, K. Perry, L. W. Cheng, A. Rummel, R. Jin
Inhibiting Oral Intoxication Of Botulinum Neurotoxin A Complex By Carbohydrate Receptor Mimics.
Toxicon V. 107 43 2015
PubMed-ID: 26272706  |  Reference-DOI: 10.1016/J.TOXICON.2015.08.003

(-) Compounds

Molecule 1 - HA-33
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET-1
    Expression System Strain: BL21-RIL (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HA-33, HA33, HA34
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Synonym: HA-33 PROTEIN,HA33,HA34,NON-TOXIN HAEMAGGLUTININ HA34
 
Molecule 2 - HA-17
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET-1
    Expression System Strain: BL21-RIL (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HA17, HA-17
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Synonym: HA-17 PROTEIN,HA17,HA17 PROTEIN,NON-TOXIN HAEMAGGLUTININ HA17

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1IPT2Ligand/IonISOPROPYL-1-BETA-D-THIOGALACTOSIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:263 , LEU A:264 , GLY A:266 , GLN A:276 , PHE A:278 , HIS A:281 , ASN A:285 , HOH A:430binding site for residue IPT A 301
2AC2SOFTWAREASP B:263 , GLY B:266 , ASN B:285binding site for residue IPT B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BP5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:77 -Pro A:78
2Ala B:77 -Pro B:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BP5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BP5)

(-) Exons   (0, 0)

(no "Exon" information available for 5BP5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..eeeeeeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee......eeeee....eeeee....hhhh.eeeeehhhhhhh..eeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.hhhh..eeeee.....hhhh.eeeee......eeeeee.....eeeee.hhh......eeeee...hhhh.eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bp5 A   9 NSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee......eeeee....eeeee....hhhh.eeeeehhhhhhh.eeeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.hhhh..eeeee..........eeeee......eeeeee.....eeeee.hhh......eeeee...hhhh.eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bp5 B  10 SLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289     


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeee.....eeeeee..eeeeee...hhhh.eeeeee....eeeeee..eeeeeeee.....eeee..hhhh.eeeee....eeeeee........eeee.............eeee.....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bp5 C   2 VERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI 145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BP5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BP5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BP5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5BP5)

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  Cis Peptide Bonds
    Ala A:77 - Pro A:78   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q45871_CLOBO | Q45871: 1ybi 4lo0 4lo1 4lo2 4lo3 4lo7 5bqu
        Q45878_CLOBO | Q45878: 4lo0 4lo1 4lo2 4lo3 4lo7 4lo8 5bqu

(-) Related Entries Specified in the PDB File

4lo0 CONTAINS THE SAME PROTEIN