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5BP2
Biol. Unit 1
Info
Asym.Unit (742 KB)
Biol.Unit 1 (369 KB)
Biol.Unit 2 (367 KB)
Biol.Unit 3 (368 KB)
Biol.Unit 4 (368 KB)
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(1)
Title
:
DEHYDRATASE DOMAIN (DH) OF A MYCOCEROSIC ACID SYNTHASE-LIKE (MAS-LIKE) PKS, CRYSTAL FORM 1
Authors
:
D. A. Herbst, P. R. Jakob, F. Zaehringer, T. Maier
Date
:
27 May 15 (Deposition) - 09 Mar 16 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: B,D (1x)
Keywords
:
Lyase, Pks, Dehydratase, Dh, Polyketide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Herbst, R. P. Jakob, F. Zahringer, T. Maier
Mycocerosic Acid Synthase Exemplifies The Architecture Of Reducing Polyketide Synthases.
Nature V. 531 533 2016
[
close entry info
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AE1 (SOFTWARE)
17: AE2 (SOFTWARE)
18: AE3 (SOFTWARE)
19: AE4 (SOFTWARE)
20: AE5 (SOFTWARE)
21: AE6 (SOFTWARE)
22: AE7 (SOFTWARE)
23: AE8 (SOFTWARE)
24: AE9 (SOFTWARE)
25: AF1 (SOFTWARE)
26: AF2 (SOFTWARE)
27: AF3 (SOFTWARE)
28: AF4 (SOFTWARE)
29: AG2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:925 , GLU A:926 , ASP A:978
binding site for residue MG A 1201
02
AC2
SOFTWARE
LYS A:1146 , ASP A:1148 , GLY A:1151
binding site for residue EDO A 1202
03
AC3
SOFTWARE
LEU A:1141 , ARG A:1143 , ASP A:1155 , HOH A:1407 , HOH A:1440
binding site for residue EDO A 1203
04
AC4
SOFTWARE
ASP A:933 , ALA A:1058
binding site for residue EDO A 1204
05
AC5
SOFTWARE
PHE A:970 , HIS A:971 , GLN A:1008 , THR A:1011
binding site for residue EDO A 1205
06
AC6
SOFTWARE
HIS A:966 , ASP A:967 , VAL A:1013 , ARG A:1015
binding site for residue EDO A 1206
07
AC7
SOFTWARE
GLU A:995 , PHE A:996 , THR A:1011 , ALA A:1012 , VAL A:1013
binding site for residue EDO A 1207
08
AC8
SOFTWARE
LEU A:975 , ASP A:977 , ALA A:979 , THR A:980 , HIS A:1001 , HOH A:1311
binding site for residue EDO A 1208
09
AC9
SOFTWARE
THR A:1069 , GLU A:1072 , HOH A:1366 , GLN C:938
binding site for residue EDO A 1209
10
AD1
SOFTWARE
GLN A:1113 , ALA A:1116 , SER A:1117 , EDO A:1213 , ALA C:1025 , HOH C:1358
binding site for residue EDO A 1210
11
AD2
SOFTWARE
SER A:899 , HIS A:901 , HOH A:1321 , HOH A:1423
binding site for residue EDO A 1211
12
AD3
SOFTWARE
HIS A:934 , HIS A:1055 , ASP A:1100 , PHE A:1103 , LEU A:1121
binding site for residue EDO A 1212
13
AD4
SOFTWARE
LEU A:1044 , GLY A:1047 , PHE A:1048 , ILE A:1107 , GLN A:1113 , EDO A:1210 , HOH A:1391 , HOH A:1452
binding site for residue EDO A 1213
14
AD5
SOFTWARE
HIS A:934 , VAL A:941 , LEU A:942 , PRO A:943 , GLY A:944 , PHE A:970 , PRO A:1122 , HOH A:1325 , HOH A:1350 , HOH A:1417
binding site for residue GOL A 1214
15
AD6
SOFTWARE
VAL A:900 , HIS A:901 , GLY A:905 , HOH A:1339 , HOH A:1430
binding site for residue CL A 1215
16
AE1
SOFTWARE
HIS C:966 , ASP C:967 , ARG C:1126 , ARG C:1127
binding site for residue EDO C 1201
17
AE2
SOFTWARE
ALA C:1058 , PRO C:1082 , PRO C:1084 , LEU C:1085 , PG4 C:1212
binding site for residue EDO C 1202
18
AE3
SOFTWARE
GLY C:1061 , SER C:1063 , ALA C:1078 , VAL C:1079 , ALA C:1080 , EDO C:1206 , HOH C:1367
binding site for residue EDO C 1203
19
AE4
SOFTWARE
GLN C:912 , GLU C:916
binding site for residue EDO C 1204
20
AE5
SOFTWARE
ASP C:933 , ARG C:935 , GLY C:1054 , HIS C:1055 , GLY C:1056 , HOH C:1435
binding site for residue EDO C 1205
21
AE6
SOFTWARE
VAL C:1079 , ARG C:1138 , TYR C:1139 , EDO C:1203
binding site for residue EDO C 1206
22
AE7
SOFTWARE
PRO C:914 , VAL C:988 , THR C:989 , ALA C:990 , PRO C:991 , EDO C:1208 , HOH C:1301
binding site for residue EDO C 1207
23
AE8
SOFTWARE
PRO C:914 , GLU C:915 , EDO C:1207 , HOH C:1301
binding site for residue EDO C 1208
24
AE9
SOFTWARE
PHE C:1103 , ILE C:1107 , LEU C:1120 , LEU C:1121 , PRO C:1122 , HOH C:1318 , HOH C:1366
binding site for residue EDO C 1209
25
AF1
SOFTWARE
HIS C:934 , VAL C:941 , LEU C:942 , PRO C:943 , GLY C:944 , PHE C:970 , PRO C:1122 , HOH C:1341 , HOH C:1424
binding site for residue GOL C 1210
26
AF2
SOFTWARE
HIS C:966
binding site for residue CL C 1211
27
AF3
SOFTWARE
GLY C:1083 , PRO C:1084 , EDO C:1202 , THR D:989 , ALA D:990 , PRO D:991 , EDO D:1208
binding site for residue PG4 C 1212
28
AF4
SOFTWARE
HOH C:1457 , ASP D:972 , HOH D:1331 , HOH D:1350 , HOH D:1372 , HOH D:1454
binding site for residue MG D 1201
29
AG2
SOFTWARE
PG4 C:1212 , PRO D:914 , VAL D:988 , THR D:989 , ALA D:990 , PRO D:991
binding site for residue EDO D 1208
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (742 KB)
Header - Asym.Unit
Biol.Unit 1 (369 KB)
Header - Biol.Unit 1
Biol.Unit 2 (367 KB)
Header - Biol.Unit 2
Biol.Unit 3 (368 KB)
Header - Biol.Unit 3
Biol.Unit 4 (368 KB)
Header - Biol.Unit 4
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