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5BP2
Biol. Unit 4
Info
Asym.Unit (742 KB)
Biol.Unit 1 (369 KB)
Biol.Unit 2 (367 KB)
Biol.Unit 3 (368 KB)
Biol.Unit 4 (368 KB)
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(1)
Title
:
DEHYDRATASE DOMAIN (DH) OF A MYCOCEROSIC ACID SYNTHASE-LIKE (MAS-LIKE) PKS, CRYSTAL FORM 1
Authors
:
D. A. Herbst, P. R. Jakob, F. Zaehringer, T. Maier
Date
:
27 May 15 (Deposition) - 09 Mar 16 (Release) - 28 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: B,D (1x)
Keywords
:
Lyase, Pks, Dehydratase, Dh, Polyketide
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. A. Herbst, R. P. Jakob, F. Zahringer, T. Maier
Mycocerosic Acid Synthase Exemplifies The Architecture Of Reducing Polyketide Synthases.
Nature V. 531 533 2016
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(17, 17)
Info
All Sites
01: AD7 (SOFTWARE)
02: AD8 (SOFTWARE)
03: AD9 (SOFTWARE)
04: AF3 (SOFTWARE)
05: AF4 (SOFTWARE)
06: AF5 (SOFTWARE)
07: AF6 (SOFTWARE)
08: AF7 (SOFTWARE)
09: AF8 (SOFTWARE)
10: AF9 (SOFTWARE)
11: AG1 (SOFTWARE)
12: AG2 (SOFTWARE)
13: AG3 (SOFTWARE)
14: AG4 (SOFTWARE)
15: AG5 (SOFTWARE)
16: AG6 (SOFTWARE)
17: AG7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD7
SOFTWARE
PHE B:970 , HIS B:971 , LEU B:1123
binding site for residue EDO B 1201
02
AD8
SOFTWARE
PHE B:1103 , ILE B:1107 , LEU B:1120 , LEU B:1121 , HOH B:1305 , HOH B:1347
binding site for residue EDO B 1202
03
AD9
SOFTWARE
HIS B:934 , LEU B:942 , PRO B:943 , GLY B:944 , LEU B:1121 , PRO B:1122 , HOH B:1305
binding site for residue GOL B 1203
04
AF3
SOFTWARE
GLY C:1083 , PRO C:1084 , EDO C:1202 , THR D:989 , ALA D:990 , PRO D:991 , EDO D:1208
binding site for residue PG4 C 1212
05
AF4
SOFTWARE
HOH C:1457 , ASP D:972 , HOH D:1331 , HOH D:1350 , HOH D:1372 , HOH D:1454
binding site for residue MG D 1201
06
AF5
SOFTWARE
LYS D:969 , HIS D:971 , ARG D:1009 , THR D:1011
binding site for residue EDO D 1202
07
AF6
SOFTWARE
TRP D:983 , SER D:985 , GLY D:997 , VAL D:998 , GLU D:999
binding site for residue EDO D 1203
08
AF7
SOFTWARE
VAL D:1039 , HOH D:1338
binding site for residue EDO D 1204
09
AF8
SOFTWARE
LEU D:1141 , ARG D:1143 , ASP D:1155 , GLU D:1157 , HOH D:1451
binding site for residue EDO D 1205
10
AF9
SOFTWARE
ASP D:967 , LYS D:969 , THR D:1011 , ALA D:1012
binding site for residue EDO D 1206
11
AG1
SOFTWARE
LEU D:1032 , ALA D:1033 , HIS D:1035 , PRO D:1036 , TYR D:1066
binding site for residue EDO D 1207
12
AG2
SOFTWARE
PG4 C:1212 , PRO D:914 , VAL D:988 , THR D:989 , ALA D:990 , PRO D:991
binding site for residue EDO D 1208
13
AG3
SOFTWARE
PHE D:970 , HIS D:971 , MET D:973 , LEU D:1123 , GLY D:1177 , GOL D:1212 , HOH D:1366 , HOH D:1432
binding site for residue EDO D 1209
14
AG4
SOFTWARE
ILE D:1107 , LEU D:1120 , LEU D:1121 , PRO D:1122 , HOH D:1314
binding site for residue EDO D 1210
15
AG5
SOFTWARE
HIS D:966 , ASP D:967 , ARG D:1126 , ARG D:1127
binding site for residue GOL D 1211
16
AG6
SOFTWARE
HIS D:934 , LEU D:942 , PRO D:943 , GLY D:944 , LEU D:1121 , PRO D:1122 , EDO D:1209 , HOH D:1314
binding site for residue GOL D 1212
17
AG7
SOFTWARE
HIS D:966 , ARG D:1015
binding site for residue CL D 1213
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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select residue range 5 to 10 in all chains
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Asym.Unit (742 KB)
Header - Asym.Unit
Biol.Unit 1 (369 KB)
Header - Biol.Unit 1
Biol.Unit 2 (367 KB)
Header - Biol.Unit 2
Biol.Unit 3 (368 KB)
Header - Biol.Unit 3
Biol.Unit 4 (368 KB)
Header - Biol.Unit 4
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