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(-) Description

Title :  BIANTHRANILATE-LIKE INHIBITOR WITH 4-ATOM "LINE" AND PHOSPHONATE "HOOK" FISHING FOR HYDROGEN BOND DONORS IN MYCOBACTERIUM TUBERCULOSIS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD)
 
Authors :  G. L. Evans, E. N. Baker, J. S. Lott, Tb Structural Genomics Consorti (Tbsgc)
Date :  27 May 15  (Deposition) - 01 Jun 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lobenzarit-Like Analogue, Tb Structural Genomics Consortium, Tbsgc, Magnesium Binding, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Evans, E. N. Baker, J. S. Lott
Binding And Mimicking Of The Phosphate-Rich Substrate, Prpp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET23A
    Expression System Strain: C41(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TRPD, MRA_2208
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 419947
    Strain: ATCC 25177 / H37RA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
17P12Ligand/Ion2-[(2-CARBOXYPHENYL)AMINO]-5-(3-PHOSPHONOPROPOXY)BENZOIC ACID
2IMD5Ligand/IonIMIDAZOLE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:91 , ASN A:138 , ALA A:179 , PRO A:180 , ARG A:181 , HIS A:183 , PRO A:184 , TYR A:186 , ARG A:187 , ALA A:190 , ARG A:193 , ARG A:194 , GLY A:206 , IMD A:401 , IMD A:402 , HOH A:503 , HOH A:513 , HOH A:561 , HOH A:577binding site for residue 7P1 A 400
2AC2SOFTWAREASP A:159 , ARG A:181 , 7P1 A:400 , IMD A:402binding site for residue IMD A 401
3AC3SOFTWAREASP A:159 , PHE A:178 , 7P1 A:400 , IMD A:401binding site for residue IMD A 402
4AC4SOFTWARETHR A:257 , ARG A:283 , MET B:86 , ASN B:138 , ALA B:179 , PRO B:180 , HIS B:183 , TYR B:186 , ARG B:187 , ALA B:190 , ARG B:193 , IMD B:403 , HOH B:526 , HOH B:530binding site for residue 7P1 B 400
5AC5SOFTWAREALA B:46 , TRP B:47 , ASP B:50 , GLU B:342 , ARG B:346binding site for residue IMD B 401
6AC6SOFTWAREALA B:236 , ARG B:237 , LEU B:305 , GLY B:306 , GLY B:307 , ILE B:351 , ASP B:352 , GLU B:357binding site for residue IMD B 402
7AC7SOFTWAREHIS B:136 , GLY B:206 , 7P1 B:400binding site for residue IMD B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BO2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BO2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BO2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BO2)

(-) Exons   (0, 0)

(no "Exon" information available for 5BO2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee...hhhhhhhhhhhhhh...eeeee....hhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bo2 A  26 SWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGTVNLSTMAAIVVAAAGVPVVKHGNRAGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    35        45        55        65        75        85        95       105   ||  120       130       140|      156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326     ||338       348       358       368 
                                                                                                             109|                      140|                                                                                                                                                                                      332|                                  
                                                                                                              115                       147                                                                                                                                                                                       335                                  


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhhhh...eeeee......hhhhhhhhh......hhhhhhhhhhhh.eeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bo2 B  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGTVNLSTMAAIVVAAAGVPVVKHGNRAASSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    34        44        54        64        74        84        94       104     ||118       128       138   ||  150       160       170       180       190       200       210       220       230       240       250       260       270       280       293       303       313       323       333       343       353       363      
                                                                                                               110|                        142|                                                                                                                                             289|                                                                            
                                                                                                                115                         145                                                                                                                                              293
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BO2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BO2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BO2)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5bo2
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  2.4.2.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTA | A5U4M0: 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4x5e 4zof 4zoj 4zok 4ztv 5bo3

(-) Related Entries Specified in the PDB File

3qr9 3QR9 CONTAINS THE SAME PROTEIN WITH NO LIGANDS BOUND AND WAS USED IN MR FOR THIS STRUCTURE
4ij1 4IJ1 CONTAINS THE PARENT INHIBITOR (I.E. WITHOUT THE PHOSPHONATE " FISHING LINE") BOUND TO THE SAME PROTEIN
5bo3