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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TRAP1 WITH SMTIN-P01
 
Authors :  C. Lee, H. K. Park, J. H. Ryu, B. H. Kang
Date :  27 Mar 15  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Mitochondrial Hsp90 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Lee, H. K. Park, H. Jeong, J. Lim, A. J. Lee, K. Y. Cheon, C. S. Kim, A. P. Thomas, B. Bae, N. D. Kim, S. H. Kim, P. G. Suh, J. H. Ryu, B. H. Kang
Development Of A Mitochondria-Targeted Hsp90 Inhibitor Base On The Crystal Structures Of Human Trap1
J. Am. Chem. Soc. V. 137 4358 2015
PubMed-ID: 25785725  |  Reference-DOI: 10.1021/JA511893N

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 60-561
    Gene: TRAP1, HSP75
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
14KP1Ligand/Ion8-[(6-IODO-1,3-BENZODIOXOL-5-YL)SULFANYL]-9-[6-(TRIPHENYL-LAMBDA~5~-PHOSPHANYL)HEXYL]-9H-PURIN-6-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:119 , ALA A:123 , ASP A:158 , ILE A:161 , MET A:163 , GLU A:167 , SER A:170 , ASN A:171 , GLY A:202 , PHE A:205 , TRP A:231 , THR A:251 , HOH A:713binding site for residue 4KP A 601

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:501 -A:527

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:201 -Gly A:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z1H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z1H)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z1H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........ee....eeee.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhh.hhhhhhhhh.eeeeeeeee.......eeeeee....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhh......eee..ee...............hhhhhhhhhhhhh.....eeeeeeeee.....eeeeeeee......eeee..eeee..hhhhhhhhhh..eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....ee.......................eeee...hhhhhhhhhhhhhhhh....eee..hhhhhhhhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z1h A  70 PLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKPSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPSALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTATEQEVKEDIAKLLRYESSALPSGQLTSLSEYASRMRAGRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVLFCFEQFDELTLLHLREFDKKKLISVET 552
                                    79        89        99       109       119       129       139       149       159       169 ||    208       218       228       238       248       258       268       278       288       298       308       318       328       338       348 ||    369       379       389       409       419       429       439       449       459       469       479       489   ||  500       510       520       530       540       550  
                                                                                                                               171|                                                                                                                                                  350|                                397|                                                                                  493|                                                         
                                                                                                                                201                                                                                                                                                   362                                 408                                                                                   495
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z1H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z1H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z1H)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  4z1h
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  TRAP1_HUMAN | Q12931
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAP1_HUMAN | Q12931: 4z1f 4z1g 4z1i 5f3k 5f5r 5hph

(-) Related Entries Specified in the PDB File

4z1f 4z1g 4z1i