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(-) Description

Title :  X-RAY CRYSTALLOGRAPHIC STRUCTURE OF HTRAP1 N-TERMINAL DOMAIN-APO
 
Authors :  N. Sung, J. Lee, J. Kim, C. Chang, A. Joachimiak, S. Lee, F. T. F. Tsai
Date :  02 Dec 15  (Deposition) - 02 Mar 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Trap1, Hsp90, Chaperone, Apo (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sung, J. Lee, J. H. Kim, C. Chang, A. Joachimiak, S. Lee, F. T. Tsai
Mitochondrial Hsp90 Is A Ligand-Activated Molecular Chaperone Coupling Atp Binding To Dimer Closure Through A Coiled-Coil Intermediate.
Proc. Natl. Acad. Sci. Usa V. 113 2952 2016
PubMed-ID: 26929380  |  Reference-DOI: 10.1073/PNAS.1516167113

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTYB12
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODON PLUS-RIL
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 60-294
    Gene: TRAP1, HSP75
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5F3K)

(-) Sites  (0, 0)

(no "Site" information available for 5F3K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F3K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5F3K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F3K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F3K)

(-) Exons   (0, 0)

(no "Exon" information available for 5F3K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.eeeeeeeee.......eeeeee.....eeeee......eeeeeeee...hhhhhhhhhhhhhhhhhhh.....eee..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f3k A  82 QGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNT 294
                                    91       101       111       121       131       141       151       161       171       181      |199       209       219       229       239       249       259       269       279       289     
                                                                                                                                    188|                                                                                                 
                                                                                                                                     197                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.eeeeeeeee.......eeeeee.....eeeee......eeeeeeee...hhhhhhhhhhhhhhhhhhhhh...eee..ee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f3k B  82 QGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNT 294
                                    91       101       111       121       131       141       151       161       171       181       201       211       221       231       241       251       261       271       281       291   
                                                                                                                                     189|                                                                                              
                                                                                                                                      200
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  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F3K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F3K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F3K)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  TRAP1_HUMAN | Q12931
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAP1_HUMAN | Q12931: 4z1f 4z1g 4z1h 4z1i 5f5r 5hph

(-) Related Entries Specified in the PDB File

5f5r