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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TRAP1 WITH PU-H71
 
Authors :  C. Lee, H. K. Park, J. H. Ryu, B. H. Kang
Date :  27 Mar 15  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Mitochondrial Hsp90 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Lee, H. K. Park, H. Jeong, J. Lim, A. J. Lee, K. Y. Cheon, C. S. Kim, A. P. Thomas, B. Bae, N. D. Kim, S. H. Kim, P. G. Suh, J. H. Ryu, B. H. Kang
Development Of A Mitochondria-Targeted Hsp90 Inhibitor Base On The Crystal Structures Of Human Trap1
J. Am. Chem. Soc. V. 137 4358 2015
PubMed-ID: 25785725  |  Reference-DOI: 10.1021/JA511893N

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETDUET
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    FragmentUNP RESIDUES 60-561
    GeneTRAP1, HSP75
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1H711Ligand/Ion8-[(6-IODO-1,3-BENZODIOXOL-5-YL)THIO]-9-[3-(ISOPROPYLAMINO)PROPYL]-9H-PURIN-6-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:123 , ASP A:158 , ILE A:161 , GLY A:162 , MET A:163 , GLU A:167 , ASN A:171 , GLY A:202 , PHE A:205 , TRP A:231 , THR A:251 , HOH A:1111binding site for residue H71 A 1001

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:501 -A:527

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z1F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z1F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z1F)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z1F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........ee....eeee.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeeee.....hhhhhhh.hhhhhhhhh.eeeeeeeee.......eeeeee....eeeeeeee....eeeeeeee...hhhhhhhhhhhhhhhhhh......eee..ee.....hhhhh.....hhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee......eeee..eeee.......hhhhh..eeeee......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eee.......eehhhhhhh......eeeeee..hhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhh.....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z1f A  69 EPLHSIISSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALPEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASGVRTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKPSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPSALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTATEQEVKEDIAKLLRYESSALPSGQLTSLSEYASRMRAGRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVLFCFEQFDELTLLHLREFDKKKLISVET 552
                                    78        88        98       108       118       128       138       148       158       168  ||   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348 ||    369       379       389       409       419       429       439       449       459       469       479       489   ||  500       510       520       530       540       550  
                                                                                                                                171|                                                                                                                                                 350|                                397|                                                                                  493|                                                         
                                                                                                                                 202                                                                                                                                                  362                                 408                                                                                   495                                                         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z1F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z1F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z1F)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAP1_HUMAN | Q129314z1g 4z1h 4z1i 5f3k 5f5r 5hph

(-) Related Entries Specified in the PDB File

4z1g 4z1h 4z1i