4Y9R - JenaLib

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Title :   RAT CYPOR MUTANT - G141DEL

Authors :   C. Xia, J. J. P. Kim

Date :   17 Feb 15 (Deposition) - 02 Mar 16 (Release) - 20 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cytochrome P450 Reductase, Fmn Binding, Semiquinone, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Rwere, C. Xia, S. Im, M. M. Haque, D. J. Stuehr, L. Waskell, J. J. Kim
Mutants Of Cytochrome P450 Reductase Lacking Either Gly-141 Or Gly-143 Destabilize Its Fmn Semiquinone.
J. Biol. Chem. V. 291 14639 2016
PubMed-ID: 27189945 | Reference-DOI: 10.1074/JBC.M116.724625

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
	Chains	:	A, B
	EC Number	:	1.6.2.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET23B
	Expression System Strain	:	C41
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 57-678
	Gene	:	POR
	Mutation	:	YES
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	P450R
	Variant	:	DELTA56

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , GLU A:142 , GLY A:143 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212	binding site for residue FMN A 701
2	AC2	SOFTWARE	ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , SER A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , TRP A:677 , HOH A:808 , HOH A:827 , HOH A:844 , HOH A:848 , HOH A:855 , HOH A:876 , HOH A:908 , HOH A:977	binding site for residue FAD A 702
3	AC3	SOFTWARE	ARG A:298 , GLY A:534 , THR A:535 , CYS A:566 , ARG A:567 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , MET A:636 , ASP A:639 , HOH A:864 , HOH A:970 , HOH A:979 , HOH A:1010 , HOH A:1033 , HOH A:1069	binding site for residue NAP A 703
4	AC4	SOFTWARE	HIS A:465 , PRO A:466 , ASN A:467 , SER A:468	binding site for residue PO4 A 704
5	AC5	SOFTWARE	SER B:86 , GLN B:87 , THR B:88 , GLY B:89 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , GLU B:142 , GLY B:143 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212	binding site for residue FMN B 701
6	AC6	SOFTWARE	HIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , SER B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , TRP B:677 , HOH B:814 , HOH B:819 , HOH B:840 , HOH B:863 , HOH B:867 , HOH B:868 , HOH B:878 , HOH B:904 , HOH B:961 , HOH B:979	binding site for residue FAD B 702
7	AC7	SOFTWARE	ARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , ASN B:635 , MET B:636 , ASP B:639 , HOH B:836 , HOH B:864 , HOH B:889 , HOH B:939 , HOH B:978	binding site for residue NAP B 703
8	AC8	SOFTWARE	HIS B:465 , PRO B:466 , ASN B:467	binding site for residue PO4 B 704

(no "SS Bond" information available for 4Y9R)

Asymmetric Unit

No.	Residues
1	Pro A:274	-	Pro A:275
2	Cys A:363	-	Pro A:364
3	Gly A:652	-	Pro A:653
4	Pro B:274	-	Pro B:275
5	Cys B:363	-	Pro B:364
6	Gly B:652	-	Pro B:653

(no "SAP(SNP)/Variant" information available for 4Y9R)

(no "PROSITE Motif" information available for 4Y9R)

(no "Exon" information available for 4Y9R)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:608
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee..ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhh......eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhhh.....eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y9r A  62 PPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATSSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPARALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    71        81        91       101       111       121       131       142       152       162       172       182       192       202       212       222       232   ||  245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495    || 510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670        
                                                                                                        140|                                                                                           236|                                                                                                                                                                                                                                                                 500|                                                                                                                                                                            
                                                                                                         142                                                                                            240                                                                                                                                                                                                                                                                  506

Chain B from PDB  Type:PROTEIN  Length:605
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh......eeeeeeeee..ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhh...eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhh........hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh.....eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhh.......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y9r B  63 PVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    72        82        92       102       112       122       132       143       153       163       173       183       193       203       213       223       233  ||   247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497 ||    513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673     
                                                                                                       140|                                                                                           236|                                                                                                                                                                                                                                                               499|                                                                                                                                                                            
                                                                                                        142                                                                                            241                                                                                                                                                                                                                                                                506

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4Y9R)

(no "CATH Domain" information available for 4Y9R)

(no "Pfam Domain" information available for 4Y9R)

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	Cis Peptide Bonds
		Cys A:363 - Pro A:364	[ RasMol ]
		Cys B:363 - Pro B:364	[ RasMol ]
		Gly A:652 - Pro A:653	[ RasMol ]
		Gly B:652 - Pro B:653	[ RasMol ]
		Pro A:274 - Pro A:275	[ RasMol ]
		Pro B:274 - Pro B:275	[ RasMol ]

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	4y9r
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	NCPR_RAT \| P00388	:	1amo 1j9z 1ja0 1ja1 3es9 3ojw 3ojx 3wkt 4y7c 4y9u 4yaf 4yal 4yao 4yau 4yaw

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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