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(-) Description

Title :  RAT CYPOR MUTANT - G143DEL
 
Authors :  C. Xia, J. J. P. Kim
Date :  17 Feb 15  (Deposition) - 02 Mar 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytochrome P450 Reductase, Fmn Binding, Semiquinone, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Rwere, C. Xia, S. Im, M. M. Haque, D. J. Stuehr, L. Waskell, J. J. Kim
Mutants Of Cytochrome P450 Reductase Lacking Either Gly-141 Or Gly-143 Destabilize Its Fmn Semiquinone.
J. Biol. Chem. V. 291 14639 2016
PubMed-ID: 27189945  |  Reference-DOI: 10.1074/JBC.M116.724625

(-) Compounds

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
    Chains: A, B
    EC Number: 1.6.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: POR
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: P450R
    Variant: DELTA56

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 4)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PO41Ligand/IonPHOSPHATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:86 , GLN A:87 , THR A:88 , GLY A:89 , THR A:90 , ALA A:91 , ALA A:138 , THR A:139 , TYR A:140 , LEU A:173 , GLY A:174 , ASN A:175 , TYR A:178 , HIS A:180 , PHE A:181 , ASN A:182 , ASP A:208 , LEU A:212binding site for residue FMN A 701
2AC2SOFTWAREHIS A:319 , ARG A:424 , ARG A:454 , TYR A:455 , TYR A:456 , SER A:457 , CYS A:472 , ALA A:473 , VAL A:474 , TYR A:478 , GLY A:488 , VAL A:489 , ALA A:490 , THR A:491 , TRP A:677 , HOH A:841 , HOH A:856 , HOH A:880 , HOH A:888 , HOH A:924 , HOH A:993 , HOH A:1130 , HOH A:1144binding site for residue FAD A 702
3AC3SOFTWAREARG A:298 , GLY A:534 , THR A:535 , CYS A:566 , SER A:596 , ARG A:597 , LYS A:602 , TYR A:604 , GLN A:606 , MET A:636 , ASP A:639 , HOH A:825 , HOH A:960 , HOH A:962 , HOH A:984 , HOH A:1052 , HOH A:1055 , HOH A:1064 , HOH A:1066 , HOH A:1185 , HOH A:1250binding site for residue NAP A 703
4AC4SOFTWARESER B:86 , GLN B:87 , THR B:88 , THR B:90 , ALA B:91 , ALA B:138 , THR B:139 , TYR B:140 , LEU B:173 , GLY B:174 , ASN B:175 , TYR B:178 , HIS B:180 , PHE B:181 , ASN B:182 , ASP B:208 , LEU B:212binding site for residue FMN B 701
5AC5SOFTWAREHIS B:319 , ARG B:424 , ARG B:454 , TYR B:455 , TYR B:456 , SER B:457 , CYS B:472 , ALA B:473 , VAL B:474 , TYR B:478 , GLY B:488 , VAL B:489 , ALA B:490 , THR B:491 , TRP B:677 , HOH B:851 , HOH B:862 , HOH B:863 , HOH B:870 , HOH B:899 , HOH B:906 , HOH B:943 , HOH B:955 , HOH B:1074 , HOH B:1087 , HOH B:1106 , HOH B:1141binding site for residue FAD B 702
6AC6SOFTWAREARG B:298 , GLY B:534 , THR B:535 , CYS B:566 , ARG B:567 , SER B:596 , ARG B:597 , LYS B:602 , TYR B:604 , GLN B:606 , MET B:636 , ASP B:639 , HOH B:882 , HOH B:982 , HOH B:999 , HOH B:1006 , HOH B:1068 , HOH B:1079 , HOH B:1102 , HOH B:1142binding site for residue NAP B 703
7AC7SOFTWAREHIS B:465 , PRO B:466 , ASN B:467 , SER B:468binding site for residue PO4 B 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y9U)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:274 -Pro A:275
2Cys A:363 -Pro A:364
3Gly A:652 -Pro A:653
4Pro B:274 -Pro B:275
5Cys B:363 -Pro B:364
6Gly B:652 -Pro B:653

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y9U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y9U)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y9U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:608
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh...........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhh......eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh.......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y9u A  62 PPVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEATEESSIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    71        81        91       101       111       121       131       145       155       165       175       185       195       205       215       225       235||     246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496   ||  510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670        
                                                                                                        140|                                                                                        236|                                                                                                                                                                                                                                                                   500|                                                                                                                                                                             
                                                                                                         145                                                                                         238                                                                                                                                                                                                                                                                    505                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:600
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y9u B  63 PVKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVEAIRQYELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPARALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS 678
                                    72        82        92       102       112       122       132       147       157       167       177       187       197       207       217       227       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493      |508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678
                                                                                                       140|                                                                                      235|                                                                                                                                                                                                                                                               500|                                                                                                                                                                            
                                                                                                        146                                                                                       242                                                                                                                                                                                                                                                                506
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y9U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y9U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y9U)

(-) Gene Ontology  (42, 42)

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  1.6.2.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCPR_RAT | P00388: 1amo 1j9z 1ja0 1ja1 3es9 3ojw 3ojx 3wkt 4y7c 4y9r 4yaf 4yal 4yao 4yau 4yaw

(-) Related Entries Specified in the PDB File

4y9r 4yaf 4yal 4yao 4yau 4yaw