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(-) Description

Title :  X-RAY STRUCTURE OF PERDEUTERATED CHOLESTEROL OXIDASE FROM STREPTOMYCES SA-COO
 
Authors :  E. Golden, A. Vrielink
Date :  29 Jan 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Perdeuteration (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Golden, P. V. Attwood, A. P. Duff, F. Meilleur, A. Vrielink
Production And Characterization Of Recombinant Perdeuterate Cholesterol Oxidase.
Anal. Biochem. V. 485 102 2015
PubMed-ID: 26073659  |  Reference-DOI: 10.1016/J.AB.2015.06.008

(-) Compounds

Molecule 1 - CHOLESTEROL OXIDASE
    Chains: A
    EC Number: 1.1.3.6, 5.3.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CHOA
    Organism Scientific: STREPTOMYCES SP. SA-COO
    Organism Taxid: 74576
    Synonym: CHOD,CHOLESTEROL ISOMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:16 , GLY A:17 , GLY A:19 , TYR A:20 , GLY A:21 , LEU A:39 , GLU A:40 , MET A:41 , TYR A:107 , GLY A:109 , ARG A:110 , GLY A:111 , GLY A:114 , GLY A:115 , ASN A:119 , GLY A:120 , GLY A:121 , MET A:122 , ILE A:218 , HIS A:248 , GLN A:249 , VAL A:250 , GLY A:288 , ALA A:289 , GLY A:290 , TYR A:446 , HIS A:447 , ASP A:474 , GLY A:475 , ASN A:485 , PRO A:486 , PHE A:487 , HOH A:808 , HOH A:823 , HOH A:830 , HOH A:839 , HOH A:930 , HOH A:943 , HOH A:977 , HOH A:987 , HOH A:1005 , HOH A:1027 , HOH A:1114binding site for residue FAD A 601
2AC2SOFTWAREGLU A:179 , GLN A:180 , LYS A:183 , ARG A:283 , HIS A:331 , TRP A:333 , ASN A:334 , HOH A:759 , HOH A:1090binding site for residue SO4 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XWR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XWR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XWR)

(-) Exons   (0, 0)

(no "Exon" information available for 4XWR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeeee.....................hhhhh...........hhhhhhhhh.........eeeee....eeeee...hhhhhh........hhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhh...eee.....hhhhhhhhhh.....hhhhh...............hhhhhhhhh..eeeee.eeeeeeee.....eeeeeeee.....eeeeeeeeeeeeee.hhhhhhhhhhhhhhhh...................eeeeee................eeeee.......eeeeee.........eeeeeeee.......eeee....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..............ee..ee........................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xwr A   9 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGIDAWDNSDSSVFAEIAPMPAGLETWVSLYLAITKNPQRGTFVYDAATDRAKLNWTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 507
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XWR)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  4xwr
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  CHOD_STRS0 | P12676
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHOD_STRS0 | P12676: 1b4v 1b8s 1cbo 1cc2 1ijh 1mxt 1n1p 1n4u 1n4v 1n4w 2gew 3b3r 3b6d 3cnj 3gyi 3gyj 4rek 4u2l 4u2s 4u2t 4xxg 5kwf

(-) Related Entries Specified in the PDB File

4xxg