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(-) Description

Title :  CRYSTAL STRUCTURE AND CHARGE DENSITY STUDIES OF CHOLESTEROL OXIDASE FROM BREVIBACTERIUM STEROLICUM AT 0.74 ULTRA-HIGH RESOLUTION
 
Authors :  B. Zarychta, A. Lyubimov, M. Ahmed, P. Munshi, B. Guillot, A. Vrielink
Date :  23 Sep 14  (Deposition) - 15 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidase, Fad Binding, Membrane, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Zarychta, A. Lyubimov, M. Ahmed, P. Munshi, B. Guillot, A. Vrielink C. Jelsch
Cholesterol Oxidase: Ultrahigh-Resolution Crystal Structure And Multipolar Atom Model-Based Analysis.
Acta Crystallogr. , Sect. D V. 71 954 2015
PubMed-ID: 25849405  |  Reference-DOI: 10.1107/S1399004715002382

(-) Compounds

Molecule 1 - CHOLESTEROL OXIDASE
    Chains: A
    EC Number: 1.1.3.6, 5.3.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 64-544
    Gene: CHOA
    Organism Scientific: STREPTOMYCES SP.
    Organism Taxid: 74576
    Strain: SA-COO
    Synonym: CHOD, CHOLESTEROL ISOMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:16 , GLY A:17 , GLY A:19 , TYR A:20 , GLY A:21 , LEU A:39 , GLU A:40 , MET A:41 , TYR A:107 , GLY A:109 , ARG A:110 , GLY A:111 , GLY A:114 , GLY A:115 , ASN A:119 , GLY A:120 , GLY A:121 , MET A:122 , ILE A:218 , HIS A:248 , GLN A:249 , VAL A:250 , GLY A:288 , ALA A:289 , GLY A:290 , TYR A:446 , HIS A:447 , ASP A:474 , GLY A:475 , ASN A:485 , PRO A:486 , PHE A:487 , HOH A:702 , HOH A:1001 , HOH A:1002 , HOH A:1265 , HOH A:1276 , HOH A:1283 , HOH A:1401 , HOH A:1402 , HOH A:1458 , HOH A:1463BINDING SITE FOR RESIDUE FAD A 601
2AC2SOFTWAREGLU A:179 , GLN A:180 , LYS A:183 , ARG A:283 , HIS A:331 , TRP A:333 , ASN A:334 , HOH A:964 , HOH A:1059BINDING SITE FOR RESIDUE PO4 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4REK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4REK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4REK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4REK)

(-) Exons   (0, 0)

(no "Exon" information available for 4REK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeeee.....................hhhhh...........hhhhhhhhh.........eeeee....eeeee...hhhhhh........hhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhh...eee.....hhhhhhhhhh.....hhhhh...............hhhhhhhhh..eeeee.eeeeeeee.....eeeeeeee.....eeeeeeeeeeeeee.hhhhhhhhhhhhhhhh...................eeeeee................eeeee.......eeeeee.........eeeeeeee.......eeee....eeee..hhhhhhhhhhhhhhhhhhhhhhhh.ee...........ee..ee........................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rek A   9 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGIDAWDNSDSSVFAEIAPMPAGLETWVSLYLAITKNPQRGTFVYDAATDRAKLNWTRDQNAPAVNAAKALFDRINKANGTIYRYDLFGTQLKAFADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 507
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4REK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4REK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4REK)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHOD_STRS0 | P12676: 1b4v 1b8s 1cbo 1cc2 1ijh 1mxt 1n1p 1n4u 1n4v 1n4w 2gew 3b3r 3b6d 3cnj 3gyi 3gyj 4u2l 4u2s 4u2t 4xwr 4xxg 5kwf

(-) Related Entries Specified in the PDB File

1n1p