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(-) Description

Title :  THE CATALYTIC MECHANISM OF HUMAN PARAINFLUENZA VIRUS TYPE 3 HAEMAGGLUTININ-NEURAMINIDASE REVEALED
 
Authors :  L. Dirr, I. El-Deeb, P. Guillon, C. Carroux, L. Chavas, M. Von Itzstein
Date :  09 Jan 15  (Deposition) - 11 Feb 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Human Parainfluenza Virus 3, Haemagglutinin-Neuraminidase, Sialidase Mechanism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Dirr, I. M. El-Deeb, P. Guillon, C. J. Carroux, L. M. Chavas, M. Von Itzstein
The Catalytic Mechanism Of Human Parainfluenza Virus Type 3 Haemagglutinin-Neuraminidase Revealed.
Angew. Chem. Int. Ed. Engl. V. 54 2936 2015
PubMed-ID: 25676091  |  Reference-DOI: 10.1002/ANIE.201412243

(-) Compounds

Molecule 1 - HEMAGGLUTININ-NEURAMINIDASE
    Atcc: VR-93D
    Chains: A, B
    EC Number: 3.2.1.18
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Plasmid: PFASTBAC/CT-TOPO
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 125-572
    Organism Scientific: HUMAN PARAINFLUENZA VIRUS 3
    Organism Taxid: 11216

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA2Ligand/IonCALCIUM ION
3EDO1Ligand/Ion1,2-ETHANEDIOL
4NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
5OEL2Ligand/Ion(6R)-2,6-ANHYDRO-3,4,5-TRIDEOXY-6-[(2S)-2,3-DIHYDROXYPROPANOYL]-3-FLUORO-5-[(2-METHYLPROPANOYL)AMINO]-4-TRIAZA-1,2-DIEN-2-IUM-1-YL-L-GULONIC ACID
6SO41Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:279 , SER A:282 , GLY A:284 , ALA A:316binding site for residue CA A 601
02AC2SOFTWAREHIS A:552 , LYS A:553 , SER A:554 , HIS B:552 , LYS B:553 , SER B:554 , LEU B:555binding site for residue SO4 A 602
03AC3SOFTWAREARG A:192 , THR A:193 , GLU A:276 , TYR A:319 , TYR A:337 , GLU A:409 , ARG A:424 , ARG A:502 , TYR A:530binding site for residue OEL A 606
04AC4SOFTWAREASP B:279 , SER B:282 , GLY B:284 , ALA B:316binding site for residue CA B 601
05AC5SOFTWARETRP B:465 , ASP B:497 , GLN B:499binding site for residue EDO B 607
06AC6SOFTWAREASN A:351 , THR A:353binding site for Poly-Saccharide residues NAG A 603 through NAG A 604 bound to ASN A 351
07AC7SOFTWAREARG A:522 , ASN A:523 , THR A:525binding site for Mono-Saccharide NAG A 605 bound to ASN A 523
08AC8SOFTWARELYS A:273 , LYS A:305 , ASN B:351 , THR B:353 , TRP B:451binding site for Poly-Saccharide residues NAG B 602 through BMA B 604 bound to ASN B 351
09AC9SOFTWAREASN B:523binding site for Mono-Saccharide NAG B 605 bound to ASN B 523
10AD1SOFTWAREARG B:192 , THR B:193 , GLU B:276 , TYR B:319 , TYR B:337 , GLU B:409 , ARG B:424 , VAL B:477 , TYR B:478 , ARG B:502 , GLY B:529 , THR B:531 , VAL B:548 , GLU B:549binding site for Di-peptide OEL B 606 and TYR B 530

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1A:159 -A:571
2A:190 -A:214
3A:256 -A:269
4A:350 -A:363
5A:355 -A:469
6A:463 -A:473
7A:535 -A:544
8B:159 -B:571
9B:190 -B:214
10B:256 -B:269
11B:350 -B:363
12B:355 -B:469
13B:463 -B:473
14B:535 -B:544

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Thr A:169 -Pro A:170
2Thr B:160 -Ser B:161
3Thr B:169 -Pro B:170

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XJR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XJR)

(-) Exons   (0, 0)

(no "Exon" information available for 4XJR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.hhhhhh......eee...........ee..........eeeeeeeee....eeeeeeee..........eeeeeeeeee....eeeeeeeee.......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee........eeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhh.hhhhh..eeeeeeeeeee.hhh.eeeeeee...........eeeeee..eeeeee.........eeeeee.......eeeee..............................eee......eeeeeee........eeeeeee...eeeeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xjr A 141 RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSCS 572
                                   150       160       170       180       190       200       210       220       230 ||    243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563         
                                                                                                                     232|                                                                                                                                                                                                                                                                                                                                                
                                                                                                                      236                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee.hhhhhh.......ee................ee.....eeeeeeeee....eeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeee.....eeeee...........eeeeee..eeeeee.........eeeeee.......eeeee..............................eee......eeeeeee........eeeeeee.....eeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xjr B 142 ITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSC 571
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381   ||  395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565      
                                                                                                                                                                                                                                                                             385|                                                                                                                                                                                     
                                                                                                                                                                                                                                                                              390
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XJR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XJR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XJR)

(-) Gene Ontology  (19, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G8G134_9MONO | G8G134: 5kv8 5kv9
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(-) Related Entries Specified in the PDB File

4xjq