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(-) Description

Title :  THE CATALYTIC MECHANISM OF HUMAN PARAINFLUENZA VIRUS TYPE 3 HAEMAGGLUTININ-NEURAMINIDASE REVEALED
 
Authors :  L. Dirr, I. El-Deeb, P. Guillon, C. Carroux, L. Chavas, M. Von Itzstein
Date :  09 Jan 15  (Deposition) - 11 Feb 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Human Parainfluenza Virus 3 Haemagglutinin-Neuraminidase, Viral Envelope Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Dirr, I. M. El-Deeb, P. Guillon, C. J. Carroux, L. M. Chavas, M. Von Itzstein
The Catalytic Mechanism Of Human Parainfluenza Virus Type 3 Haemagglutinin-Neuraminidase Revealed.
Angew. Chem. Int. Ed. Engl. V. 54 2936 2015
PubMed-ID: 25676091  |  Reference-DOI: 10.1002/ANIE.201412243

(-) Compounds

Molecule 1 - HEMAGGLUTININ-NEURAMINIDASE
    Atcc: VR-93D
    Chains: A, B
    EC Number: 3.2.1.18
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Plasmid: PFASTBAC/CT-TOPO
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 125-572
    Organism Scientific: HUMAN PARAINFLUENZA VIRUS 3
    Organism Taxid: 11216

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 22)

Asymmetric/Biological Unit (7, 22)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CA2Ligand/IonCALCIUM ION
3EDO8Ligand/Ion1,2-ETHANEDIOL
4GOL2Ligand/IonGLYCEROL
5MAN1Ligand/IonALPHA-D-MANNOSE
6NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO42Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:830binding site for residue CA A 601
02AC2SOFTWAREVAL A:197 , ALA A:259 , LEU A:260 , GLY A:325 , ILE A:326 , TYR A:327 , HOH A:788binding site for residue EDO A 607
03AC3SOFTWARETRP A:465 , ASP A:497 , SER A:498 , GLN A:499 , ARG A:515 , EDO A:609binding site for residue EDO A 608
04AC4SOFTWAREGLN A:499 , EDO A:608 , HOH A:1011binding site for residue EDO A 609
05AC5SOFTWAREHIS A:342binding site for residue EDO A 610
06AC6SOFTWARELYS A:149 , ASN A:152 , GLY A:416 , HOH A:708 , HOH A:713 , HOH A:723 , HOH A:753 , HOH A:971binding site for residue GOL A 611
07AC7SOFTWAREARG A:192 , GLU A:409 , ARG A:424 , TYR A:478 , ARG A:502binding site for residue GOL A 612
08AC8SOFTWAREASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:943binding site for residue CA B 601
09AC9SOFTWAREARG B:424 , ARG B:502 , HOH B:898 , HOH B:937binding site for residue SO4 B 602
10AD1SOFTWAREVAL B:197 , ALA B:259 , LEU B:260 , GLY B:325 , ILE B:326 , TYR B:327 , HOH B:797binding site for residue EDO B 606
11AD2SOFTWAREHIS A:552 , LYS A:553 , SER A:554 , HIS B:552 , LYS B:553 , SER B:554 , LEU B:555 , HOH B:896binding site for residue SO4 B 607
12AD3SOFTWAREGLY B:330 , LYS B:331 , ILE B:332 , VAL B:384 , HOH B:734binding site for residue EDO B 608
13AD4SOFTWARETRP B:465 , ASP B:497 , SER B:498 , GLN B:499binding site for residue EDO B 609
14AD5SOFTWAREHIS B:368 , ASP B:374 , ARG B:376binding site for residue EDO B 610
15AD6SOFTWAREASN A:351 , THR A:353 , TRP A:451 , THR A:513 , HOH A:705 , HOH A:820 , HOH A:853 , HOH A:882 , HOH A:897 , HOH A:997 , HOH A:1006 , HOH A:1019binding site for Poly-Saccharide residues NAG A 602 through MAN A 605 bound to ASN A 351
16AD7SOFTWAREARG A:522 , ASN A:523 , THR A:525binding site for Mono-Saccharide NAG A 606 bound to ASN A 523
17AD8SOFTWAREASN B:351 , TRP B:451binding site for Poly-Saccharide residues NAG B 603 through NAG B 604 bound to ASN B 351
18AD9SOFTWAREARG B:522 , ASN B:523 , THR B:525binding site for Mono-Saccharide NAG B 605 bound to ASN B 523

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1A:159 -A:571
2A:190 -A:214
3A:256 -A:269
4A:350 -A:363
5A:355 -A:469
6A:463 -A:473
7A:535 -A:544
8B:159 -B:571
9B:190 -B:214
10B:256 -B:269
11B:350 -B:363
12B:355 -B:469
13B:463 -B:473
14B:535 -B:544

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:169 -Pro A:170
2Thr B:169 -Pro B:170

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XJQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XJQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XJQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee.hhhhhh......eee...........ee...ee.....eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeee.hhhhh.eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeeee.hhh.eeeeeee...........eeeeee..eeeeee.........eeeeee.......eeee...............................eee.......eeeeee........eeeeee....eeeeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xjq A 141 RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSCS 572
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570  


Chain B from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.hhhhhh.....eeee...........ee...ee.....eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeeee......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeee.....eeeeee...........eeeeee..eeeeee.........eeeeee.......eeee...............................eee.......eeeeee........eeeeee....eeeeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xjq B 137 VPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSCS 572
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386||     398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568    
                                                                                                                                                                                                                                                                                    387|                                                                                                                                                                                      
                                                                                                                                                                                                                                                                                     390
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XJQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XJQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XJQ)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G8G134_9MONO | G8G134: 5kv8 5kv9
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        G8G134_9MONO | G8G134: 4xjr

(-) Related Entries Specified in the PDB File

4xjr