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(-) Description

Title :  CRYSTAL STRUCTURE OF HPIV3 HEMAGGLUTININ-NEURAMINIDASE, H552Q/Q559R MUTANT
 
Authors :  R. Xu, I. A. Wilson
Date :  30 Sep 13  (Deposition) - 06 Nov 13  (Release) - 27 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Envelope Protein, Viral Fusion Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Xu, S. G. Palmer, M. Porotto, L. M. Palermo, S. Niewiesk, I. A. Wilson A. Moscona
Interaction Between The Hemagglutinin-Neuraminidase And Fusion Glycoproteins Of Human Parainfluenza Virus Type Iii Regulates Viral Growth In Vivo.
Mbio V. 4 00803 2013
PubMed-ID: 24149514  |  Reference-DOI: 10.1128/MBIO.00803-13

(-) Compounds

Molecule 1 - HEMAGGLUTININ-NEURAMINIDASE
    Chains: A, B
    EC Number: 3.2.1.18
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HI5
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC-HT
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 136-572)
    Gene: HN
    Mutation: YES
    Organism Common: HPIV-3
    Organism Scientific: HUMAN PARAINFLUENZA 3 VIRUS
    Organism Taxid: 11217
    Strain: WASH/47885/57

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 45)

Asymmetric/Biological Unit (9, 45)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2CA2Ligand/IonCALCIUM ION
3EDO15Ligand/Ion1,2-ETHANEDIOL
4FUL1Ligand/IonBETA-L-FUCOSE
5MAN7Ligand/IonALPHA-D-MANNOSE
6NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
7PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
8PO43Ligand/IonPHOSPHATE ION
9SO41Ligand/IonSULFATE ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:192 , THR A:193 , GLU A:409 , ARG A:424 , TYR A:530 , HOH A:778 , HOH A:888 , HOH A:904 , HOH A:948 , HOH A:1011BINDING SITE FOR RESIDUE PO4 A 612
02AC2SOFTWAREASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:764BINDING SITE FOR RESIDUE CA A 613
03AC3SOFTWAREVAL A:197 , ALA A:259 , LEU A:260 , GLY A:325 , ILE A:326 , TYR A:327 , HOH A:713 , HOH A:980BINDING SITE FOR RESIDUE EDO A 614
04AC4SOFTWARETRP A:465 , ASP A:497 , SER A:498 , GLN A:499 , ARG A:515 , PEG A:623BINDING SITE FOR RESIDUE EDO A 615
05AC5SOFTWAREARG A:402 , GLN A:403 , ARG A:446 , HOH A:926 , HOH B:934BINDING SITE FOR RESIDUE EDO A 616
06AC6SOFTWARETYR A:221 , THR A:246 , ILE A:249 , HOH A:905 , PRO B:176BINDING SITE FOR RESIDUE EDO A 617
07AC7SOFTWAREGLU A:276 , TYR A:337 , PHE A:372 , MET A:377 , TRP A:406 , GLY A:407 , SER A:408 , THR A:426 , HOH A:758 , HOH A:1030BINDING SITE FOR RESIDUE EDO A 618
08AC8SOFTWAREMET A:167 , LYS A:168 , THR A:169 , HIS A:342BINDING SITE FOR RESIDUE EDO A 619
09AC9SOFTWAREGLU A:276 , TYR A:319 , PEG A:622 , HOH A:740BINDING SITE FOR RESIDUE EDO A 620
10BC1SOFTWAREHOH A:777 , HOH A:970 , ASN B:460 , ASN B:461BINDING SITE FOR RESIDUE EDO A 621
11BC2SOFTWAREGLN A:215 , ASP A:216 , LYS A:254 , PRO A:272 , EDO A:620 , SO4 A:624 , HOH A:815 , HOH A:864BINDING SITE FOR RESIDUE PEG A 622
12BC3SOFTWAREASP A:497 , SER A:498 , GLN A:499 , LYS A:524 , EDO A:615 , HOH A:793 , HOH A:1000BINDING SITE FOR RESIDUE PEG A 623
13BC4SOFTWAREARG A:192 , GLN A:215 , PEG A:622BINDING SITE FOR RESIDUE SO4 A 624
14BC5SOFTWAREARG B:192 , THR B:193 , GLU B:409 , ARG B:424 , ARG B:502 , TYR B:530 , BMA B:603 , MAN B:604 , HOH B:735 , HOH B:742 , HOH B:895 , HOH B:963 , HOH B:970 , HOH B:973BINDING SITE FOR RESIDUE PO4 B 610
15BC6SOFTWAREGLN A:552 , LYS A:553 , SER A:554 , LYS B:553 , SER B:554 , HOH B:993BINDING SITE FOR RESIDUE PO4 B 611
16BC7SOFTWAREASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:749BINDING SITE FOR RESIDUE CA B 612
17BC8SOFTWAREVAL B:197 , ALA B:259 , LEU B:260 , GLY B:325 , ILE B:326 , TYR B:327 , HOH B:726BINDING SITE FOR RESIDUE EDO B 613
18BC9SOFTWAREGLY B:330 , LYS B:331 , ILE B:332 , VAL B:384 , HOH B:841BINDING SITE FOR RESIDUE EDO B 614
19CC1SOFTWARETRP B:465 , ASP B:497 , GLN B:499 , ARG B:515 , PEG B:620BINDING SITE FOR RESIDUE EDO B 615
20CC2SOFTWAREASP A:154 , ARG A:158 , LEU B:261 , ASN B:262 , THR B:263 , ASP B:264BINDING SITE FOR RESIDUE EDO B 616
21CC3SOFTWARETHR B:487 , SER B:489BINDING SITE FOR RESIDUE EDO B 617
22CC4SOFTWAREGLU B:276 , HOH B:719BINDING SITE FOR RESIDUE EDO B 618
23CC5SOFTWAREASN B:504 , ASN B:523 , LYS B:524 , HOH B:825 , HOH B:909BINDING SITE FOR RESIDUE EDO B 619
24CC6SOFTWARESER B:498 , GLN B:499 , VAL B:503 , EDO B:615 , HOH B:784 , HOH B:839 , HOH B:950BINDING SITE FOR RESIDUE PEG B 620
25CC7SOFTWAREGLU B:276 , TYR B:280 , TYR B:337 , PHE B:372 , TRP B:406 , GLY B:407 , SER B:408 , GLU B:409 , ARG B:424 , THR B:426 , HOH B:853 , HOH B:872BINDING SITE FOR RESIDUE PEG B 621
26CC8SOFTWARETHR A:302 , ARG A:303 , ASN A:308BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 308
27CC9SOFTWAREASN A:351 , THR A:353 , TRP A:451 , THR A:513 , HOH A:762 , HOH A:839 , HOH A:890 , HOH A:897 , HOH A:936 , HOH A:979 , LYS B:273 , LYS B:305 , ASN B:307 , HOH B:974BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 351 RESIDUES 602 TO 609
28DC1SOFTWAREASN A:523 , THR A:525BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 523 RESIDUES 610 TO 611
29DC2SOFTWAREARG B:192 , THR B:302 , ARG B:303 , ASN B:308 , PRO B:458 , GLY B:459 , ASN B:460 , THR B:475 , GLY B:476 , LYS B:500 , ARG B:502 , PO4 B:610 , HOH B:786 , HOH B:850 , HOH B:996BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 308 RESIDUES 601 TO 605
30DC3SOFTWAREASN B:351 , THR B:353 , TRP B:451 , HOH B:864BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 351 RESIDUES 606 TO 608
31DC4SOFTWAREASN B:523 , THR B:525BINDING SITE FOR MONO-SACCHARIDE NAG B 609 BOUND TO ASN B 523

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1A:159 -A:571
2A:190 -A:214
3A:256 -A:269
4A:350 -A:363
5A:355 -A:469
6A:463 -A:473
7A:535 -A:544
8B:159 -B:571
9B:190 -B:214
10B:256 -B:269
11B:350 -B:363
12B:355 -B:469
13B:463 -B:473
14B:535 -B:544

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:169 -Pro A:170
2Thr B:169 -Pro B:170

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MZE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MZE)

(-) Exons   (0, 0)

(no "Exon" information available for 4MZE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4mzea_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee.hhhhhh......eee.......................eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeeee......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeee.......eeeeee...........eeeeee..eeeeee.........eeeeee.......eeee...............................eee......eeeeeee........eeeeeee...eeeeee......eeeeeeeeeeee..eeeeeeeeeee......eeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mze A 141 RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTSTERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINQKSLDTFRPMLFKTEIPKSCS 572
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570  


Chain B from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4mzeb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee.hhhhhh......eee.......................eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeeee......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeee.......eeeeee...........eeeeee..eeeeee.........eeeeee.......eeee...............................eee......eeeeeee........eeeeeee...eeeeee.......eeeeeeeeeee..eeeeeeeeeee......eeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mze B 141 RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTSTERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINQKSLDTFRPMLFKTEIPKSCS 572
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MZE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MZE)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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        HN_PI3H4 | P08492: 4mza 4xjr

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4mza