4MZA - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HPIV3 HEMAGGLUTININ-NEURAMINIDASE

Authors :   R. Xu, I. A. Wilson

Date :   29 Sep 13 (Deposition) - 06 Nov 13 (Release) - 27 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym./Biol. Unit : A,B

Keywords :   Viral Envelope Protein, Viral Fusion Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Xu, S. G. Palmer, M. Porotto, L. M. Palermo, S. Niewiesk, I. A. Wilson A. Moscona
Interaction Between The Hemagglutinin-Neuraminidase And Fusion Glycoproteins Of Human Parainfluenza Virus Type Iii Regulates Viral Growth In Vivo.
Mbio V. 4 00803 2013
PubMed-ID: 24149514 | Reference-DOI: 10.1128/MBIO.00803-13

Molecule 1 - HEMAGGLUTININ-NEURAMINIDASE
	Chains	:	A, B
	EC Number	:	3.2.1.18
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Cell Line	:	HI5
	Expression System Common	:	CABBAGE LOOPER
	Expression System Plasmid	:	PFASTBAC-HT
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	CATALYTIC DOMAIN (UNP RESIDUES 136-572)
	Gene	:	HN
	Organism Common	:	HPIV-3
	Organism Scientific	:	HUMAN PARAINFLUENZA 3 VIRUS
	Organism Taxid	:	11217
	Strain	:	WASH/47885/57

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (8, 31)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	CA	2	Ligand/Ion	CALCIUM ION
3	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
4	FUL	1	Ligand/Ion	BETA-L-FUCOSE
5	MAN	7	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	PO4	2	Ligand/Ion	PHOSPHATE ION
8	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:803	BINDING SITE FOR RESIDUE CA A 612
02	AC2	SOFTWARE	VAL A:197 , ALA A:259 , LEU A:260 , GLY A:325 , ILE A:326 , TYR A:327 , HOH A:746	BINDING SITE FOR RESIDUE EDO A 613
03	AC3	SOFTWARE	MET A:167 , LYS A:168 , THR A:169 , HIS A:342 , HOH A:937 , HOH A:944	BINDING SITE FOR RESIDUE SO4 A 614
04	AC4	SOFTWARE	TRP A:465 , ASP A:497 , GLN A:499 , ARG A:515	BINDING SITE FOR RESIDUE EDO A 615
05	AC5	SOFTWARE	SER A:498 , GLN A:499 , HOH A:928 , HOH A:950	BINDING SITE FOR RESIDUE EDO A 616
06	AC6	SOFTWARE	ASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:732	BINDING SITE FOR RESIDUE CA B 610
07	AC7	SOFTWARE	HIS A:552 , LYS A:553 , SER A:554 , HIS B:552 , LYS B:553 , SER B:554 , LEU B:555 , HOH B:800	BINDING SITE FOR RESIDUE PO4 B 611
08	AC8	SOFTWARE	ARG B:424 , ARG B:502 , BMA B:603 , HOH B:895 , HOH B:915 , HOH B:922	BINDING SITE FOR RESIDUE PO4 B 612
09	AC9	SOFTWARE	ARG B:361 , HIS B:538 , TYR B:539 , ASN B:540 , LYS B:541 , HOH B:933	BINDING SITE FOR RESIDUE SO4 B 613
10	BC1	SOFTWARE	VAL B:197 , ALA B:259 , LEU B:260 , GLY B:325 , ILE B:326 , TYR B:327 , HOH B:707	BINDING SITE FOR RESIDUE EDO B 614
11	BC2	SOFTWARE	TRP B:465 , ASP B:497 , SER B:498 , GLN B:499 , ARG B:515	BINDING SITE FOR RESIDUE EDO B 615
12	BC3	SOFTWARE	THR A:302 , ARG A:303 , ASN A:308	BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 308
13	BC4	SOFTWARE	ASN A:351 , THR A:353 , TRP A:451 , THR A:513 , HOH A:779 , HOH A:795 , HOH A:814 , HOH A:818 , HOH A:878 , HOH A:880 , HOH A:929 , HOH A:930 , HOH A:945 , HOH A:963 , HOH A:999 , LYS B:273 , GLY B:284 , LYS B:305 , ASN B:306 , ASN B:307 , PRO B:314 , TYR B:315 , GLU B:341 , ASN B:461 , HOH B:725	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 351 RESIDUES 602 TO 610
14	BC5	SOFTWARE	ARG A:522 , ASN A:523 , THR A:525	BINDING SITE FOR MONO-SACCHARIDE NAG A 611 BOUND TO ASN A 523
15	BC6	SOFTWARE	THR B:302 , ARG B:303 , ASN B:308 , PRO B:458 , GLY B:459 , ASN B:460 , THR B:475 , GLY B:476 , LYS B:500 , ARG B:502 , PO4 B:612 , HOH B:824	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 308 RESIDUES 601 TO 604
16	BC7	SOFTWARE	LYS A:305 , ASN B:351 , TRP B:451	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 351 RESIDUES 605 TO 607
17	BC8	SOFTWARE	ARG B:522 , ASN B:523 , THR B:525	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 523 RESIDUES 608 TO 609

Asymmetric/Biological Unit

No.	Residues
1	A:159	-	A:571
2	A:190	-	A:214
3	A:256	-	A:269
4	A:350	-	A:363
5	A:355	-	A:469
6	A:463	-	A:473
7	A:535	-	A:544
8	B:159	-	B:571
9	B:190	-	B:214
10	B:256	-	B:269
11	B:350	-	B:363
12	B:355	-	B:469
13	B:463	-	B:473
14	B:535	-	B:544

Asymmetric/Biological Unit

No.	Residues
1	Thr A:169	-	Pro A:170
2	Thr B:169	-	Pro B:170

(no "SAP(SNP)/Variant" information available for 4MZA)

(no "PROSITE Motif" information available for 4MZA)

(no "Exon" information available for 4MZA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4mzaa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee.hhhhhh......eee...........ee..........eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeeee......eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeeee.hhh.eeeeeee...........eeeeee..eeeeee.........eeeeee.......eeee...............................eee......eeeeeee........eeeeeee...eeeeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mza A 141 RITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTSTERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSCS 572
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570

Chain B from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mzab_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee.hhhhhh......eee................ee.....eeeeeeeee....eeeeeeee..........eeeeeeeeeee.....eeeeeeeeeeehhhhh.eeeeeeee..eeeeeee....hhhhhhhh.....eeeeee.....eeeeeehhhhhee...eeeeee.....eee..eeeeeeeeee..................hhhhhhhhhhhhhhh...eeeeeeeee.......eeeeee...........eeeeee..eeeeee.........eeeeee..hhhhheeee...............................eee......eeeeeee........eeeeeee...eeeeee.......eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mza B 136 EVPPQRITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSIIVVDKGLNSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPWGHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTSTERVNELAIRNKTLSAGYTTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKTEIPKSCS 572
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: Sialidases (238)

Family: Sialidases (neuraminidases) (178)

Protein domain: automated matches (38)

Human parainfluenza 3 virus [TaxId: 11217] (2)

1a	d4mzaa_	A:
1b	d4mzab_	B:

(no "CATH Domain" information available for 4MZA)

(no "Pfam Domain" information available for 4MZA)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Thr A:169 - Pro A:170	[ RasMol ]
		Thr B:169 - Pro B:170	[ RasMol ]

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	4mza
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	3.2.1.18
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	HN_PI3H4 \| P08492	:	4mze 4xjr

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 31)

Sites (17, 17)

SS Bonds (14, 14)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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