4XCT - JenaLib

Title :   CRYSTAL STRUCTURE OF A HYDROXAMATE BASED INHIBITOR ARP101 (EN73) IN COMPLEX WITH THE MMP-9 CATALYTIC DOMAIN.

Authors :   E. A. Stura, L. Tepshi, E. Nuti, V. Dive, E. Cassar-Lajeunesse, L. Vera, A. Rossello

Date :   18 Dec 14 (Deposition) - 22 Apr 15 (Release) - 07 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym./Biol. Unit : A

Keywords :   Inhibitor-Complex, Metalloprotease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Nuti, A. R. Cantelmo, C. Gallo, A. Bruno, B. Bassani, C. Camodeca, T. Tuccinardi, L. Vera, E. Orlandini, S. Nencetti, E. A. Stura, A. Martinelli, V. Dive, A. Albini, A. Rossello
N-O-Isopropyl Sulfonamido-Based Hydroxamates As Matrix Metalloproteinase Inhibitors: Hit Selection And In Vivo Antiangiogenic Activity.
J. Med. Chem. V. 58 7224 2015
PubMed-ID: 26263024 | Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00367

Compounds

Molecule 1 - MATRIX METALLOPROTEINASE-9,MATRIX METALLOPROTEINASE-9
	Chains	:	A
	EC Number	:	3.4.24.35
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-14B
	Expression System Taxid	:	469008
	Expression System Variant	:	STAR
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 113-216,UNP RESIDUES 392-444
	Gene	:	MMP9, CLG4B
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	N73 ZINC CHELATING INHIBITOR - HUMAN WILD-TYPE MMP-9 CATALYTIC DOMAIN UNP RESIDUES 107-215/391-443
	Synonym	:	MMP-9,92 KDA GELATINASE,92 KDA TYPE IV COLLAGENASE, GELATINASE B,GELB

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 16)

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:187 , LEU A:188 , ALA A:189 , LEU A:222 , HIS A:226 , GLU A:227 , HIS A:230 , HIS A:236 , LEU A:243 , TYR A:245 , PRO A:246 , MET A:247 , TYR A:248 , ZN A:302 , PGO A:315 , HOH A:518	binding site for residue N73 A 301
02	AC2	SOFTWARE	HIS A:226 , HIS A:230 , HIS A:236 , N73 A:301	binding site for residue ZN A 302
03	AC3	SOFTWARE	HIS A:175 , ASP A:177 , HIS A:190 , HIS A:203	binding site for residue ZN A 303
04	AC4	SOFTWARE	ASP A:182 , GLY A:183 , ASP A:185 , LEU A:187 , ASP A:205 , GLU A:208	binding site for residue CA A 304
05	AC5	SOFTWARE	ASP A:165 , GLY A:197 , GLN A:199 , ASP A:201 , HOH A:520 , HOH A:530	binding site for residue CA A 305
06	AC6	SOFTWARE	ASP A:131 , ASP A:206 , GLU A:208 , HOH A:456 , HOH A:459	binding site for residue CA A 306
07	AC7	SOFTWARE	HIS A:190 , ALA A:191 , PHE A:192	binding site for residue DMS A 307
08	AC8	SOFTWARE	THR A:157 , ASP A:182	binding site for residue DMS A 308
09	AC9	SOFTWARE	ILE A:125 , GLN A:126 , TYR A:128 , ALA A:173 , GLU A:174 , HOH A:435	binding site for residue EDO A 309
10	AD1	SOFTWARE	SER A:211 , LEU A:212 , GLY A:215 , VAL A:216 , HIS A:266 , HOH A:581	binding site for residue EDO A 310
11	AD2	SOFTWARE	HIS A:118 , HIS A:119 , ASN A:120 , HOH A:407	binding site for residue EDO A 311
12	AD3	SOFTWARE	LEU A:187 , ASN A:262	binding site for residue EDO A 312
13	AD4	SOFTWARE	ASP A:113 , LYS A:115 , TRP A:116 , HIS A:117 , HIS A:118 , GLY A:195 , HOH A:406 , HOH A:558	binding site for residue GOL A 313
14	AD5	SOFTWARE	ARG A:162 , GLY A:183 , LYS A:184 , ASP A:207 , HOH A:472	binding site for residue PGO A 314
15	AD6	SOFTWARE	PRO A:240 , ALA A:242 , ARG A:249 , N73 A:301 , HOH A:528	binding site for residue PGO A 315
16	AD7	SOFTWARE	HIS A:117 , GLU A:130 , LEU A:132 , PRO A:133	binding site for residue BUD A 316

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee.................eee..........eeee....ee......eehhhhhhhhhhhhh........................hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xct A 113 DLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIRHLYG 269
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (38, 38)

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