5HMJ - JenaLib

Title :   RE-REFINEMENT OF 4XAN: HEN LYSOZYME WITH CARBOPLATIN IN SODIUM BROMIDE SOLUTION

Authors :   J. R. Helliwell

Date :   16 Jan 16 (Deposition) - 02 Mar 16 (Release) - 09 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)

Keywords :   Carboplatin, Histidine, Nabr, Hen Egg White Lysozyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. W. Tanley, A. M. Schreurs, L. M. Kroon-Batenburg, J. R. Helliwell
Re-Refinement Of 4Xan: Hen Egg-White Lysozyme With Carboplatin In Sodium Bromide Solution.
Acta Crystallogr. , Sect. F V. 72 251 2016
PubMed-ID: 26919531 | Reference-DOI: 10.1107/S2053230X16000777
(for further references see the PDB file header)

Compounds

Molecule 1 - LYSOZYME C
	Chains	:	A
	EC Number	:	3.2.1.17
	Organism Common	:	CHICKEN
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031
	Synonym	:	1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (5, 19)

Asymmetric Unit (5, 19)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	BR	14	Ligand/Ion	BROMIDE ION
3	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
4	NA	1	Ligand/Ion	SODIUM ION
5	PT	1	Ligand/Ion	PLATINUM (II) ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	BR	-1	Ligand/Ion	BROMIDE ION
3	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
4	NA	-1	Ligand/Ion	SODIUM ION
5	PT	-1	Ligand/Ion	PLATINUM (II) ION

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:15 , PT A:210	binding site for residue BR A 201
02	AC2	SOFTWARE	HIS A:15 , PT A:210	binding site for residue BR A 202
03	AC3	SOFTWARE	TYR A:23 , ASN A:113	binding site for residue BR A 203
04	AC4	SOFTWARE	SER A:24 , GLY A:26 , GLN A:121	binding site for residue BR A 204
05	AC5	SOFTWARE	GLY A:67 , ARG A:68 , THR A:69 , SER A:72	binding site for residue BR A 205
06	AC6	SOFTWARE	SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , HOH A:339 , HOH A:353	binding site for residue NA A 207
07	AC7	SOFTWARE	ARG A:73 , ASN A:74	binding site for residue BR A 208
08	AC8	SOFTWARE	HIS A:15 , BR A:201 , BR A:202	binding site for residue PT A 210
09	AC9	SOFTWARE	CYS A:6	binding site for residue BR A 212
10	AD1	SOFTWARE	ARG A:14 , ILE A:88	binding site for residue BR A 213
11	AD2	SOFTWARE	GLY A:71	binding site for residue BR A 214
12	AD3	SOFTWARE	LYS A:1 , VAL A:2	binding site for residue BR A 215
13	AD4	SOFTWARE	ARG A:5 , ALA A:122	binding site for residue ACT A 216
14	AD5	SOFTWARE	ILE A:58 , ASN A:59 , TRP A:63 , ILE A:98 , ALA A:107 , HOH A:336	binding site for residue DMS A 217
15	AD6	SOFTWARE	ARG A:61 , TRP A:62 , GLY A:71	binding site for residue DMS A 218
16	AD7	SOFTWARE	ASN A:65 , ASN A:74 , ILE A:78 , PRO A:79	binding site for residue BR A 219

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....eee.....eee....ee...................hhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hmj A   1 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

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Related Entries

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Related Entries Specified in the PDB File

4xan

A RE-REFINEMENT OF 4XAN, HEN EGG WHITE LYSOZYME (HEWL) WITH CARBOPLATIN CRYSTALLISED IN NABR SOLUTION, HAS BEEN MADE. THIS FOLLOWS OUR RESPONSE ARTICLE (TANLEY ET AL 2015) TO THE CRITIQUE ARTICLE OF SHABALIN ET AL 2015. NB 4XAN SUPERCEDED 4NSF. THE DIFFRACTION IMAGE DATA ARE AVAILABLE AT HTTP://DX.DOI.ORG/10.15127/ 1.266906

Description