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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH BAICALEIN
 
Authors :  H. Zhang, J. Zhai, L. Zhang, C. Li, Y. Zhao, X. Hu
Date :  26 Nov 14  (Deposition) - 16 Sep 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lyase, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhang, J. Zhai, L. Zhang, C. Li, Y. Zhao, Y. Chen, Q. Li, X. P. Hu
In Vitro Inhibition Of Glyoxalase By Flavonoids: New Insights From Crystallographic Analysis
Curr Top Med Chem V. 16 460 2016
PubMed-ID: 26268338

(-) Compounds

Molecule 1 - LACTOYLGLUTATHIONE LYASE
    Chains: A, B
    EC Number: 4.4.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLO1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ALDOKETOMUTASE,GLYOXALASE I,GLX I,KETONE-ALDEHYDE MUTASE, METHYLGLYOXALASE,S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
13WL2Ligand/Ion5,6,7-TRIHYDROXY-2-PHENYL-4H-CHROMEN-4-ONE
2ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:127 , GLU A:173 , 3WL A:203 , GLN B:34 , GLU B:100binding site for residue ZN A 201
2AC2SOFTWAREGLN A:34 , GLU A:100 , HIS B:127 , GLU B:173 , 3WL B:201binding site for residue ZN A 202
3AC3SOFTWAREHIS A:127 , MET A:158 , GLU A:173 , ILE A:180 , ALA A:181 , ZN A:201 , HOH A:389 , GLN B:34 , LEU B:61 , PHE B:63 , PHE B:68 , LEU B:70 , GLU B:100binding site for residue 3WL A 203
4AC4SOFTWAREGLN A:34 , PHE A:63 , PHE A:68 , LEU A:70 , PHE A:93 , GLU A:100 , ZN A:202 , HIS B:127 , MET B:158 , GLU B:173 , ILE B:180 , ILE B:183binding site for residue 3WL B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X2A)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:121 -Pro A:122
2Asp B:121 -Pro B:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X2A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X2A)

(-) Exons   (0, 0)

(no "Exon" information available for 4X2A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh..eeee..........eeee.....eeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x2a A  15 TAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIA 181
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee.........eeee.....eeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x2a B   8 SSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGMKGLAFIQDPDGYWIEILNPNKIATI 183
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       158       168       178     
                                                                                                                                                                              156|                         
                                                                                                                                                                               158
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X2A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X2A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X2A)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LGUL_MOUSE | Q9CPU0: 2za0 4kyh 4kyk 4opn 4pv5

(-) Related Entries Specified in the PDB File

4kyh 4KYH CONTAINS THE SAME PROTEIN COMPLEXED WITH ZOPOLRESTAT.
2za0 2ZA0 CONTAINS THE SAME PROTEIN COMPLEXED WITH METHYL GERFELIN.
4kyk 4KYK CONTAINS THE SAME PROTEIN COMPLEXED WITH INDOMETHACIN.