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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH MAH
 
Authors :  J. Zhai, L. Zhang, M. Yuan, H. Zhang
Date :  06 Feb 14  (Deposition) - 11 Feb 15  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lyase/Lyase Inhibitor, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Shi, J. Zhai, Z. Zheng, X. Hu
Reversible Inhibition Of Glyoxalase I: Synthesis And Activity Evaluation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOYLGLUTATHIONE LYASE
    Chains: A, B
    EC Number: 4.4.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLO1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: GLYOXALASE I, ALDOKETOMUTASE, GLX I, KETONE-ALDEHYDE MUTASE, METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ZBF2Ligand/IonL-GAMMA-GLUTAMYL-N-(3-ETHYNYLPHENYL)-N-HYDROXY-L-GLUTAMINYLGLYCINE
2ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:34 , GLU A:100 , HIS B:127 , GLU B:173 , ZBF B:202BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREARG A:123 , HIS A:127 , LYS A:151 , GLY A:156 , LYS A:157 , MET A:158 , LEU A:161 , PHE A:163 , GLU A:173 , ILE A:180 , HOH A:351 , HOH A:362 , HOH A:392 , GLN B:34 , ARG B:38 , PHE B:68 , LEU B:70 , GLU B:100 , THR B:102 , ASN B:104 , ZN B:201 , HOH B:347BINDING SITE FOR RESIDUE ZBF A 202
3AC3SOFTWAREHIS A:127 , GLU A:173 , ZBF A:202 , GLN B:34 , GLU B:100BINDING SITE FOR RESIDUE ZN B 201
4AC4SOFTWAREGLN A:34 , ARG A:38 , PHE A:68 , LEU A:70 , PHE A:93 , GLU A:100 , THR A:102 , ASN A:104 , ZN A:201 , ARG B:123 , HIS B:127 , LYS B:151 , GLY B:156 , LYS B:157 , MET B:158 , PHE B:163 , GLU B:173 , LEU B:175 , HOH B:338 , HOH B:340 , HOH B:343 , HOH B:392BINDING SITE FOR RESIDUE ZBF B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OPN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:121 -Pro A:122
2Asp B:121 -Pro B:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OPN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OPN)

(-) Exons   (0, 0)

(no "Exon" information available for 4OPN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee..........eeee.....eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4opn A   9 SGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKI 180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178  


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee..........eeee.....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4opn B   9 SGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIAT 182
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OPN)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        LGUL_MOUSE | Q9CPU0: 2za0 4kyh 4kyk 4pv5 4x2a

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OPN)