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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I IN COMPLEXED WITH 18-BETA-GLYCYRRHETINIC ACID
 
Authors :  H. Zhang, J. Zhai, L. P. Zhang, Y. N. Zhao, C. Li, X. P. Hu
Date :  15 Mar 14  (Deposition) - 18 Mar 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhang, Q. Huang, J. Zhai, Y. N. Zhao, L. P. Zhang, Y. Y. Chen, R. W. Zhang, Q. Li, X. P. Hu
Structural Basis For 18-Beta-Glycyrrhetinic Acid As A Novel Non-Gsh Analog Glyoxalase I Inhibitor
Acta Pharmacol. Sin. V. 36 1145 2015
PubMed-ID: 26279158  |  Reference-DOI: 10.1038/APS.2015.59

(-) Compounds

Molecule 1 - LACTOYLGLUTATHIONE LYASE
    Chains: A, B
    EC Number: 4.4.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(+)
    Expression System Taxid: 562
    Gene: GLO1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: GLYOXALASE I, ALDOKETOMUTASE, GLX I, KETONE-ALDEHYDE MUTASE, METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CBW1Ligand/Ion(3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN-12-EN-29-OICACID
2ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:34 , GLU A:100 , HOH A:341 , HIS B:127 , GLU B:173BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREARG A:123 , LYS A:151 , GLY A:156 , ARG B:38 , ASN B:104BINDING SITE FOR RESIDUE CBW A 202
3AC3SOFTWAREHIS A:127 , GLU A:173 , HOH A:330 , GLN B:34 , GLU B:100BINDING SITE FOR RESIDUE ZN B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PV5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:121 -Pro A:122
2Asp B:121 -Pro B:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PV5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PV5)

(-) Exons   (0, 0)

(no "Exon" information available for 4PV5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee..........eeee.....eeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv5 A  13 DETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIAT 182
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182


Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee..........eeee.....eeeee...hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pv5 B   3 EPQPASSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIATII 184
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PV5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PV5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PV5)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        LGUL_MOUSE | Q9CPU0: 2za0 4kyh 4kyk 4opn 4x2a

(-) Related Entries Specified in the PDB File

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