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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH INDOMETHACIN
 
Authors :  J. Zhai, M. Yuan, L. Zhang, Y. Chen, H. Zhang, S. Chen, Y. Zhao
Date :  29 May 13  (Deposition) - 07 Aug 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lactoylglutachione Lyase, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhai, H. Zhang, L. Zhang, Y. Zhao, S. Chen, Y. Chen, X. Peng, Q. Li, M. Yuan, X. Hu
Zopolrestat As A Human Glyoxalase I Inhibitor And Its Structural Basis
Chemmedchem 2013
PubMed-ID: 23857942  |  Reference-DOI: 10.1002/CMDC.201300243

(-) Compounds

Molecule 1 - LACTOYLGLUTATHIONE LYASE
    Chains: A, B
    EC Number: 4.4.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLO1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ALDOKETOMUTASE, GLYOXALASE I, GLX I, KETONE-ALDEHYDE MUTASE, METHYLGLYOXALASE, S-D-LACTOYLGLUTATHIONE METHYLGLYOXAL LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1IMN1Ligand/IonINDOMETHACIN
2ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:127 , GLU A:173 , GLN B:34 , GLU B:100 , HOH B:422BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREGLN A:34 , GLU A:100 , HOH A:334 , HIS B:127 , GLU B:173BINDING SITE FOR RESIDUE ZN A 202
3AC3SOFTWAREMET A:66 , LEU A:70 , PHE A:93 , HOH A:335 , LYS B:151 , GLY B:156 , LYS B:157 , MET B:158 , LEU B:161 , PHE B:163 , HOH B:413BINDING SITE FOR RESIDUE IMN B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KYK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:121 -Pro A:122
2Asp B:121 -Pro B:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KYK)

(-) Exons   (0, 0)

(no "Exon" information available for 4KYK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains d4kyka_ A: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeee....eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhh...eee..........eeee.....eeeee....hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kyk A   6 PASSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIATII 184
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175         


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4kykb_ B: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh....hhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeeehhh.eeeeeee..hhhhh..hhhhhhhhhh....eeeeeee.hhhhh..............eeeeeee..hhhhhhhhhhhhh..eee..........eeee.....eeeeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kyk B   8 SSGLTDETAFSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIATII 184
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KYK)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LGUL_MOUSE | Q9CPU0: 2za0 4kyh 4opn 4pv5 4x2a

(-) Related Entries Specified in the PDB File

2za0 CRYSTAL STRUCTURE OF MOUSE GLYOXALASE I COMPLEXED WITH METHYL-GERFELIN
4kyh