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(-) Description

Title :  STRUCTURE OF THE LRR AND NTF2-LIKE DOMAINS OF NXF1 COMPLEXED WITH NXT1
 
Authors :  S. Aibara, E. Valkov, M. Stewart
Date :  17 Nov 14  (Deposition) - 04 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Nuclear Export, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Aibara, J. Katahira, E. Valkov, M. Stewart
The Principal Mrna Nuclear Export Factor Nxf1:Nxt1 Forms A Symmetric Binding Platform That Facilitates Export Of Retroviral Cte-Rna.
Nucleic Acids Res. V. 43 1883 2015
PubMed-ID: 25628361  |  Reference-DOI: 10.1093/NAR/GKV032

(-) Compounds

Molecule 1 - NUCLEAR RNA EXPORT FACTOR 1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 96-555
    Gene: NXF1, TAP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TIP-ASSOCIATED PROTEIN,TIP-ASSOCIATING PROTEIN,MRNA EXPORT FACTOR TAP
 
Molecule 2 - NTF2-RELATED EXPORT PROTEIN 1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-140
    Gene: NXT1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN P15

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WYK)

(-) Sites  (0, 0)

(no "Site" information available for 4WYK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WYK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WYK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WYK)

(-) Exons   (0, 0)

(no "Exon" information available for 4WYK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhee....eee......hhhhhhh.......hhhhhhhhhhhhhhhh....eee........hhhhhhhhhhh....eee.......hhhhhhhhh.....eee...hhhhhh..hhhhhhhhhhhhh....ee..ee........................hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeee.........hhhhhh.........hhhhhhhhh..hhhhhhhhhhhh..eee.hhhheeeeeee....eeeeeeeeeee........eeeeeeeeeeeeehhheeeeeeeeeeeee.hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wyk A 203 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFA 549
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422||     435       445       455       465       475       485       495       505       515       525       535       545    
                                                                                                                                                                                                                                                      423|                                                                                                                          
                                                                                                                                                                                                                                                       427                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..eeeehhhhhhhhhhhh..eeeeeeeeeeee.hhhhh....eeeeeeeeeeee.....eeeeeeeeeeeee....eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wyk B   3 SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS 140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132        


Chain C from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhee....eee......hhhhhhh.......hhhhhhhhhhhhhhhh....eee........hhhhhhhhhhh....eee.......hhhhhhhhh.....eee...hhhhhh..hhhhhhhhhhhhh....ee..ee........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee........hhhhhhhhh........hhhhhhhhh..hhhhhhhhhhhh..eee.....eeeeeee....eeeeeeeeeee...hhhh.eeeeeeeeeeee.....eeeeeeeeeeee.hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wyk C 202 NELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFA 549
                                   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421  ||   433       443       453       463       473       483       493       503       513       523       533       543      
                                                                                                                                                                                                                                                        424|                                                                                                                          
                                                                                                                                                                                                                                                         427                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..eeeehhhhhhhhhhhh.....eeeeeeeee..........eeeeeeeeee.......eeeeeeeeeeeee....eeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wyk D   3 SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS 140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WYK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WYK)

(-) Gene Ontology  (24, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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  NXT1_HUMAN | Q9UKK6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NXF1_HUMAN | Q9UBU9: 1fo1 1ft8 1go5 1jkg 1jn5 1koh 1koo 1oai 2z5k 2z5m 3rw6 3rw7
        NXT1_HUMAN | Q9UKK6: 1jkg 1jn5

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WYK)