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(-) Description

Title :  COMPLEX OF D. MELANOGASTER EIF4E WITH EIF4G AND CAP ANALOG
 
Authors :  D. Peter, O. Weichenrieder
Date :  16 Dec 14  (Deposition) - 25 Feb 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  Translation, Gene Regulation, Cap Binding Protein, 4E Binding Protein, Translation Initiation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peter, C. Igreja, R. Weber, L. Wohlbold, C. Weiler, L. Ebertsch, O. Weichenrieder, E. Izaurralde
Molecular Architecture Of 4E-Bp Translational Inhibitors Bound To Eif4E.
Mol. Cell V. 57 1074 2015
PubMed-ID: 25702871  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.017

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-259
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: EIF4E, EIF-4F 25 KDA SUBUNIT, MRNA CAP-BINDING PROTEIN
 
Molecule 2 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4G, ISOFORM A
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 578-650
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: EUKARYOTIC TRANSLATION INITIATION FACTOR 4G, ISOFORM C, FI02056P, TRANSLATION INITIATION FACTOR EIF4G

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MGT2Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MGT1Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MGT1Ligand/Ion7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP C:89 , MET C:134 , TRP C:135 , GLU C:136 , ARG C:188 , LYS C:193 , HOH C:2017 , HOH C:2026BINDING SITE FOR RESIDUE MGT C1237
2AC2SOFTWARETRP A:89 , MET A:134 , TRP A:135 , GLU A:136 , ARG A:188 , LYS A:193 , LEU C:208BINDING SITE FOR RESIDUE MGT A1237

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UEC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UEC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UEC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UEC)

(-) Exons   (0, 0)

(no "Exon" information available for 4UEC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee.......hhhheeeeeeeeehhhhhhhhhh...........eeeeee...............eeeeeee....hhhhhhhhhhhhhhhh.........eeeeeee.....eeeeeee.....hhhhhhhhhhhhhh........eeeeehhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uec A  66 PHMKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMV 236
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235 


Chain B from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .....................hhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 4uec B 602 IINYNEGQWSPNNPSGKKQYDREQLLQLREVKASRI 637
                                   611       621       631      


Chain C from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee...........eeeeeeeeehhhhhhhh.............eeeeee...............eeeeeee....hhhhhhhhhhhhhhhh.........eeeeeeee....eeeeeee.....hhhhhhhhhhhhhh........eeeeehhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uec C  66 PHMKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMV 236
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UEC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UEC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UEC)

(-) Gene Ontology  (39, 52)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4E_DROME | P48598: 4axg 4ue8 4ue9 4uea 4ueb 5abu 5abv 5t47 5t48
UniProtKB/TrEMBL
        O61380_DROME | O61380: 5t47 5t48

(-) Related Entries Specified in the PDB File

4ue8 COMPLEX OF D. MELANOGASTER EIF-4E WITH THE 4E BINDING PROTEIN THOR
4ue9 COMPLEX OF D. MELANOGASTER EIF-4E WITH THE 4E BINDING PROTEIN 4E-T
4uea COMPLEX OF D. MELANOGASTER EIF-4E WITH A DESIGNED 4E BINDING PROTEIN (FORM I)
4ueb COMPLEX OF D. MELANOGASTER EIF-4E WITH A DESIGNED 4E BINDING PROTEIN (FORM II)
4ued COMPLEX OF HUMAN EIF-4E WITH THE 4E BINDING PROTEIN 4E-BP1