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(-) Description

Title :  COMPLEX OF D. MELANOGASTER EIF4E WITH A DESIGNED 4E-BINDING PROTEIN (FORM II)
 
Authors :  D. Peter, O. Weichenrieder
Date :  16 Dec 14  (Deposition) - 25 Feb 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Translation, Gene Regulation, Cap Binding Protein, 4E Binding Protein, Translational Repression (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peter, C. Igreja, R. Weber, L. Wohlbold, C. Weiler, L. Ebertsch, O. Weichenrieder, E. Izaurralde
Molecular Architecture Of 4E-Bp Translational Inhibitors Bound To Eif4E.
Mol. Cell V. 57 1074 2015
PubMed-ID: 25702871  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.017

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A, C, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-259
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: EIF4E, EIF-4F 25 KDA SUBUNIT, MRNA CAP-BINDING PROTEIN
 
Molecule 2 - DESIGNED 4E-BP
    Chains: B, D, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-36
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):   CD  
Biological Unit 2 (1x): AB    
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UEB)

(-) Sites  (0, 0)

(no "Site" information available for 4UEB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UEB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UEB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UEB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UEB)

(-) Exons   (0, 0)

(no "Exon" information available for 4UEB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeee...........eeeeeeeeehhhhhhhh............eeeeeee.........hhhh..eeeeeee....hhhhhhhhhhhhhhhh.........eeeeeeee....eeeeeee.....hhhhhhhhhhhhhh..eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ueb A  67 HMKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALSLQYQLHKDT 234
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 ||    232  
                                                                                                                                                                                 218|         
                                                                                                                                                                                  225         


Chain B from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh..hhhh....hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4ueb B  -2 MLERYSKVDLLALRYSPLSQTPPGIELEGRLRRMNIWRTGS  38
                                     7        17        27        37 


Chain C from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeee...........eeeeeeeeehhhhhhhh.............eeeeee.........hhhh..eeeeeee....hhhhhhhhhhhhhhhh.........eeeeeee.....eeeeeee.....hhhhhhhhhhhhhhh......eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ueb C  68 MKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTM 235
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227        


Chain D from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh..hhhh....hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4ueb D  -2 MLERYSKVDLLALRYSPLSQTPPGIELEGRLRRMNIWRTGS  38
                                     7        17        27        37 


Chain E from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...........eeeeeeeeehhhhhhhhh............eeeeee.........hhhh..eeeeeee....hhhhhhhhhhhhhhhhh........eeeeeee.....eeeeeee.....hhhhhhhhhhhhhhh......eeeeee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ueb E  69 KHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMIYTL 248
                                    78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228      |247 
                                                                                                                                                                                                235|   
                                                                                                                                                                                                 245   


Chain F from PDB  Type:PROTEIN  Length:39
                                                                       
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..........hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 4ueb F   0 ERYSKVDLLALRYSPLSQTPPGIELEGRLRRMNIWRTGS  38
                                     9        19        29
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UEB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UEB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UEB)

(-) Gene Ontology  (36, 36)

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  IF4E_DROME | P48598
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4E_DROME | P48598: 4axg 4ue8 4ue9 4uea 4uec 5abu 5abv 5t47 5t48

(-) Related Entries Specified in the PDB File

4ue8 COMPLEX OF D. MELANOGASTER EIF-4E WITH THE 4E BINDING PROTEIN THOR
4ue9 COMPLEX OF D. MELANOGASTER EIF-4E WITH THE 4E BINDING PROTEIN 4E-T
4uea COMPLEX OF D. MELANOGASTER EIF-4E WITH A DESIGNED 4E BINDING PROTEIN (FORM I)
4uec COMPLEX OF D. MELANOGASTER EIF-4E WITH EIF-4G AND CAP ANALOG
4ued COMPLEX OF HUMAN EIF-4E WITH THE 4E BINDING PROTEIN 4E-BP1