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(-) Description

Title :  COMPLEX OF D. MELANOGASTER EIF4E WITH THE 4E-BINDING PROTEIN MEXTLI AND CAP ANALOG
 
Authors :  D. Peter, O. Weichenrieder
Date :  09 Aug 15  (Deposition) - 02 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Translation, Gene Regulation, Cap Binding Protein, 4E Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peter, R. Weber, C. Koene, M. -Y. Chung, L. Ebertsch, V. Truffault, O. Weichenrieder, C. Igreja, E. Izaurralde
Mextli Proteins Use Both Canonical Bipartite And Novel Tripartite Binding Modes To Form Eif4E Complexes That Display Differential Sensitivity To 4E-Bp Regulation
Genes Dev. V. 29 1835 2015
PubMed-ID: 26294658  |  Reference-DOI: 10.1101/GAD.269068.115

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNYC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 69-248
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: EIF-4E, EIF4E, EIF-4F 25 KDA SUBUNIT, MRNA CAP-BINDING PROT PROTEIN
 
Molecule 2 - 4E-BINDING PROTEIN MEXTLI
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector: PETMCN (PNEA)
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 577-640
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GTG1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:89 , MET A:92 , GLY A:121 , MET A:134 , TRP A:135 , GLU A:136 , ARG A:188 , LYS A:193 , HOH A:2041 , HOH A:2057 , HOH A:2058 , GLU B:584 , HIS B:585 , TYR B:588 , HOH B:2006BINDING SITE FOR RESIDUE GTG A1249
2AC2SOFTWAREHIS B:585BINDING SITE FOR RESIDUE CL B1636

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ABU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ABU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ABU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ABU)

(-) Exons   (0, 0)

(no "Exon" information available for 5ABU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee.......hhhheeeeeeeeehhhhhhhhhh...........eeeeee...............eeeeee..hhhhhhhhhhhhhhhh.........eeeeeeee....eeeeeee.....hhhhhhhhhhhhhh.........eeeehhhhhh.....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5abu A  67 HMKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKVKSIYTL 248
                                    76        86        96       106       116       126       136       146   ||  159       169       179       189       199       209       219       229       243     
                                                                                                             150|                                                                                237|      
                                                                                                              154                                                                                 242      


Chain B from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh...........hhhhhhh..................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 5abu B 578 RVSYDIEHLLYYSMSPHSWTLPTDWQKMQETAPSILRNKDLQDESQRFDGDKYLASIK 635
                                   587       597       607       617       627
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ABU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ABU)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (43, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4E_DROME | P48598: 4axg 4ue8 4ue9 4uea 4ueb 4uec 5abv 5t47 5t48
        MXT_DROME | Q9VR35: 5abv

(-) Related Entries Specified in the PDB File

5abv COMPLEX OF D. MELANOGASTER EIF4E WITH THE 4E-BINDING PROTEIN MEXTLI
5abx COMPLEX OF C. ELEGANS EIF4E-3 WITH THE 4E-BINDING PROTEIN MEXTLI AND CAP ANALOG
5aby COMPLEX OF C. ELEGANS EIF4E-3 WITH THE 4E-BINDING PROTEIN MEXTLI