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(-) Description

Title :  COMPLEX OF D. MELANOGASTER EIF4E WITH THE 4E BINDING PROTEIN THOR
 
Authors :  D. Peter, O. Weichenrieder
Date :  16 Dec 14  (Deposition) - 25 Feb 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Translation, Gene Regulation, Cap Binding Protein, 4E Binding Protein, Translational Repression (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peter, C. Igreja, R. Weber, L. Wohlbold, C. Weiler, L. Ebertsch, O. Weichenrieder, E. Izaurralde
Molecular Architecture Of 4E-Bp Translational Inhibitors Bound To Eif4E.
Mol. Cell V. 57 1074 2015
PubMed-ID: 25702871  |  Reference-DOI: 10.1016/J.MOLCEL.2015.01.017

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-259
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: EIF4E, EIF-4F 25 KDA SUBUNIT, MRNA CAP-BINDING PROTEIN
 
Molecule 2 - 4E-BINDING PROTEIN THOR
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETMCN (PNEA)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 50-83
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
2P4G1Ligand/Ion1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:176 , ASP A:178BINDING SITE FOR RESIDUE NA A1235
2AC2SOFTWAREASN A:160 , HOH A:2112 , HOH A:2114BINDING SITE FOR RESIDUE NA A1236

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UE8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UE8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UE8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UE8)

(-) Exons   (0, 0)

(no "Exon" information available for 4UE8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.....eeeeeeeehhhhhhhhhh...........eeeeee...............eeeeeeee...hhhhhhhhhhhhhhhh.........eeeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhh........eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ue8 A  66 PHMKHPLMNVWTLWYLENDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDT 234
                                    75       |92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
                                            83|                                                                                                                                               
                                             91                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4ue8 B  47 PHMTKLIYERAFMKNLRGSPLSQTPPSNVPSCLLRGT  83
                                    56        66        76
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UE8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UE8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UE8)

(-) Gene Ontology  (51, 53)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF4E_DROME | P48598: 4axg 4ue9 4uea 4ueb 4uec 5abu 5abv 5t47 5t48

(-) Related Entries Specified in the PDB File

4ue9 COMPLEX OF D. MELANOGASTER EIF-4E WITH THE 4E BINDING PROTEIN 4E-T
4uea COMPLEX OF D. MELANOGASTER EIF-4E WITH A DESIGNED 4E BINDING PROTEIN (FORM I)
4ueb COMPLEX OF D. MELANOGASTER EIF-4E WITH A DESIGNED 4E BINDING PROTEIN (FORM II)
4uec COMPLEX OF D. MELANOGASTER EIF-4E WITH EIF-4G AND CAP ANALOG
4ued COMPLEX OF HUMAN EIF-4E WITH THE 4E BINDING PROTEIN 4E-BP1