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(-) Description

Title :  N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M81
 
Authors :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, M. -A. Tortoric B. Baron, P. England, F. Bontems, F. A. Rey, J. -F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
Date :  03 Dec 14  (Deposition) - 19 Aug 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.66
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Viral Protein, Respiratory Syncytial Virus, Ribonucleoprotein, Nucleocapsid, Phosphoprotein, Antiviral Compounds, Halogen Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, S. Lassoued, J. Fix, M. A. Tortorici, S. Hoos, B. Baron, P. England, D. Desmaele, P. Couvreur, F. Bontems, F. A. Rey, J. F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
A Druggable Pocket At The Nucleocapsid/Phosphoprotein Interaction Site Of The Human Respiratory Syncytial Virus.
J. Virol. V. 89 11129 2015
PubMed-ID: 26246564  |  Reference-DOI: 10.1128/JVI.01612-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL GLOBULAR DOMAIN, RESIDUES 31-252
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2
    Organism Taxid: 11259
    Synonym: PROTEIN N, NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1M812Ligand/Ion1-[(2-CHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1M811Ligand/Ion1-[(2-CHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1M811Ligand/Ion1-[(2-CHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:131 , ARG A:132 , TYR A:135 , ARG A:150 , HIS A:151BINDING SITE FOR RESIDUE M81 A1301
2AC2SOFTWARELYS B:46 , SER B:131 , ARG B:132 , TYR B:135 , ARG B:150 , HIS B:151BINDING SITE FOR RESIDUE M81 B1301
3AC3SOFTWARELYS A:195 , LYS B:170 , ALA B:181 , ARG B:184BINDING SITE FOR RESIDUE SO4 B1255

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UCD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:235 -Gly A:236

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UCD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UCD)

(-) Exons   (0, 0)

(no "Exon" information available for 4UCD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucd A  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTGGSRVEGIFAGLFMNAYGL 253
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171  ||   182       192       202       212       222       232||     243       253
                                                                                                                                                                        174|                                                      233|                  
                                                                                                                                                                         176                                                       235                  


Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucd B  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGLE 254
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UCD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UCD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UCD)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAP_HRSVA | P03418: 2wj8 2yhm 4bkk 4uc6 4uc7 4uc8 4uc9 4uca 4ucb 4ucc 4uce

(-) Related Entries Specified in the PDB File

4uc6 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc7 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc8 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PHENYLALANINE OF THE PHOSPHOPROTEIN
4uc9 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL DIPEPTIDE OF THE PHOSPHOPROTEIN
4uca N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucb N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucc N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M76
4uce N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M72