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(-) Description

Title :  N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PHENYLALANINE OF THE PHOSPHOPROTEIN
 
Authors :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, M. -A. Tortoric B. Baron, P. England, F. Bontems, F. A. Rey, J. -F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
Date :  03 Dec 14  (Deposition) - 19 Aug 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Viral Protein, Ribonucleoprotein, Nucleocapsid, Phosphoprotein, Antiviral Compounds, Halogen Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, S. Lassoued, J. Fix, M. A. Tortorici, S. Hoos, B. Baron, P. England, D. Desmaele, P. Couvreur, F. Bontems, F. A. Rey, J. F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
A Druggable Pocket At The Nucleocapsid/Phosphoprotein Interaction Site Of The Human Respiratory Syncytial Virus.
J. Virol. V. 89 11129 2015
PubMed-ID: 26246564  |  Reference-DOI: 10.1128/JVI.01612-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL GLOBULAR DOMAIN, RESIDUES 31-252
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2
    Organism Taxid: 11259
    Synonym: PROTEIN N, NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PHE2Mod. Amino AcidPHENYLALANINE
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PHE1Mod. Amino AcidPHENYLALANINE
3SO46Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PHE1Mod. Amino AcidPHENYLALANINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:131 , ARG A:132 , TYR A:135 , HIS A:151 , HOH A:2090 , ASP B:103 , GLY B:106BINDING SITE FOR RESIDUE PHE A 301
02AC2SOFTWAREARG A:73 , PHE A:226 , ALA A:229 , GLN A:230 , THR A:233BINDING SITE FOR RESIDUE SO4 A1254
03AC3SOFTWARESER A:32 , ARG A:101BINDING SITE FOR RESIDUE SO4 A1255
04AC4SOFTWAREMET A:194 , LYS A:195 , ARG A:196 , TYR A:197 , LYS A:198 , ARG B:184BINDING SITE FOR RESIDUE GOL A1256
05AC5SOFTWAREARG B:132 , TYR B:135 , ARG B:150 , HIS B:151 , SO4 B:1253 , HOH B:2084BINDING SITE FOR RESIDUE PHE B 301
06AC6SOFTWAREARG B:132 , PHE B:301BINDING SITE FOR RESIDUE SO4 B1253
07AC7SOFTWAREHIS B:100 , ARG B:101BINDING SITE FOR RESIDUE SO4 B1254
08AC8SOFTWARELYS A:81 , ARG B:76 , ARG B:84 , ALA B:92 , HOH B:2134BINDING SITE FOR RESIDUE SO4 B1255
09AC9SOFTWARELYS A:195 , ALA B:181 , ARG B:184BINDING SITE FOR RESIDUE SO4 B1256
10BC1SOFTWARELYS B:81 , SER B:237 , ARG B:238 , HOH B:2135 , HOH B:2136BINDING SITE FOR RESIDUE SO4 B1257
11BC2SOFTWAREARG A:150 , ILE B:104 , ASN B:105 , LYS B:136 , LYS B:140 , HOH B:2079BINDING SITE FOR RESIDUE SO4 B1258
12BC3SOFTWARETHR B:120 , THR B:121 , HOH B:2060 , HOH B:2064BINDING SITE FOR RESIDUE GOL B1259

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UC8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:172 -Ala A:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UC8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UC8)

(-) Exons   (0, 0)

(no "Exon" information available for 4UC8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc8 A  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTKGGSRVEGIFAGLFMNAYGLF 301
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 ||
                                                                                                                                                                                                                                                       253|
                                                                                                                                                                                                                                                        301


Chain B from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh....eee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc8 B  31 DSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTKGGSRVEGIFAGLFMNAYGF 301
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 ||
                                                                                                                                                                                                                                                       252|
                                                                                                                                                                                                                                                        301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UC8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UC8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UC8)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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    Ala A:172 - Ala A:173   [ RasMol ]  
 
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        NCAP_HRSVA | P03418: 2wj8 2yhm 4bkk 4uc6 4uc7 4uc9 4uca 4ucb 4ucc 4ucd 4uce

(-) Related Entries Specified in the PDB File

4uc6 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc7 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc9 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL DIPEPTIDE OF THE PHOSPHOPROTEIN
4uca N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucb N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucc N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M76
4ucd N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M81
4uce N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M72