4UC9 - JenaLib

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Title :   N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL DIPEPTIDE OF THE PHOSPHOPROTEIN

Authors :   M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, M. -A. Tortoric B. Baron, P. England, F. Bontems, F. A. Rey, J. -F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy

Date :   03 Dec 14 (Deposition) - 19 Aug 15 (Release) - 14 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Viral Protein, Respiratory Syncytial Virus, Ribonucleoprotein, Nucleocapsid, Phosphoprotein, Antiviral Compounds, Halogen Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, S. Lassoued, J. Fix, M. -A. Tortorici, S. Hoos, B. Baron, P. England, D. Desmaele, P. Couvreur, F. Bontems, F. A. Rey, J. -F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
A Druggable Pocket At The Nucleocapsid/Phosphoprotein Interaction Site Of The Human Respiratory Syncytial Virus.
J. Virol. V. 89 11129 2015
PubMed-ID: 26246564 | Reference-DOI: 10.1128/JVI.01612-15

Molecule 1 - NUCLEOPROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL GLOBULAR DOMAIN, UNP RESIDUES 31-252
	Organism Scientific	:	HUMAN RESPIRATORY SYNCYTIAL VIRUS A2
	Organism Taxid	:	11259
	Synonym	:	PROTEIN N, NUCLEOCAPSID PROTEIN

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 15)

No.	Name	Count	Type	Full Name
1	ASP	4	Mod. Amino Acid	ASPARTIC ACID
2	PHE	4	Mod. Amino Acid	PHENYLALANINE
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	PHE	1	Mod. Amino Acid	PHENYLALANINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	PHE	1	Mod. Amino Acid	PHENYLALANINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 5)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	PHE	1	Mod. Amino Acid	PHENYLALANINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	ASP	1	Mod. Amino Acid	ASPARTIC ACID
2	PHE	1	Mod. Amino Acid	PHENYLALANINE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG B:132 , ASP B:1300 , PHE B:1301	BINDING SITE FOR RESIDUE SO4 B1253
02	AC2	SOFTWARE	ARG D:132 , ASP D:1300 , PHE D:1301	BINDING SITE FOR RESIDUE SO4 D1253
03	AC3	SOFTWARE	ARG B:184 , ARG C:238 , HOH C:2121 , LYS D:81 , ASP D:85	BINDING SITE FOR RESIDUE SO4 C1254
04	AC4	SOFTWARE	ILE B:80 , ARG B:84 , LYS B:91 , ALA B:92 , HOH B:2037 , THR D:115	BINDING SITE FOR RESIDUE SO4 B1254
05	AC5	SOFTWARE	ARG A:132 , ASP A:1300 , PHE A:1301	BINDING SITE FOR RESIDUE SO4 A1253
06	AC6	SOFTWARE	ASP C:1300 , PHE C:1301	BINDING SITE FOR RESIDUE SO4 C1255
07	AC7	SOFTWARE	THR C:99 , HIS C:100 , ARG C:101	BINDING SITE FOR RESIDUE SO4 C1256
08	AC8	SOFTWARE	LYS A:46 , GLU A:128 , SER A:131 , ARG A:132 , TYR A:135 , ARG A:150 , HIS A:151 , SO4 A:1253 , HOH A:2019	BINDING SITE FOR DI-PEPTIDE ASP A1300 AND PHE A1301
09	AC9	SOFTWARE	LYS B:46 , MET B:50 , SER B:131 , ARG B:132 , TYR B:135 , ARG B:150 , HIS B:151 , SO4 B:1253	BINDING SITE FOR DI-PEPTIDE ASP B1300 AND PHE B1301
10	BC1	SOFTWARE	LYS C:46 , GLU C:128 , SER C:131 , ARG C:132 , TYR C:135 , GLU C:144 , ARG C:150 , HIS C:151 , SO4 C:1255 , HOH C:2123	BINDING SITE FOR DI-PEPTIDE ASP C1300 AND PHE C1301
11	BC2	SOFTWARE	LYS D:46 , SER D:131 , ARG D:132 , TYR D:135 , GLU D:144 , ARG D:150 , HIS D:151 , SO4 D:1253 , HOH D:2121	BINDING SITE FOR DI-PEPTIDE ASP D1300 AND PHE D1301

(no "SS Bond" information available for 4UC9)

(no "Cis Peptide Bond" information available for 4UC9)

(no "SAP(SNP)/Variant" information available for 4UC9)

(no "PROSITE Motif" information available for 4UC9)

(no "Exon" information available for 4UC9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eeeeee....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc9 A  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYG 252
                                    41        51        61        71        81        91       101   ||  113       123       133       143       153       163       173       183       193       203       213       223       233       243         
                                                                                                   105|                                                                                                                                                
                                                                                                    108

Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc9 B  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLADRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYG 252
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171||     183       193       203       213       223       233       243         
                                                                                                                                                                      172|                                                                             
                                                                                                                                                                       175

Chain C from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeeeee...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc9 C  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGL 253
                                    41        51        61        71        81        91       101   ||  112       122       132       142       152       162       172       182       192       202       212       222       232       242       252 
                                                                                                   105|                                                                                                                                                  
                                                                                                    107

Chain D from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeee....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uc9 D  32 SIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDIMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYG 252
                                    41        51        61        71        81        91       101  ||   115       125       135       145       155       165     ||179       189       199       209       219       229       239       249   
                                                                                                  104|                                                           171|                                                                            
                                                                                                   109                                                            176

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UC9)

(no "CATH Domain" information available for 4UC9)

(no "Pfam Domain" information available for 4UC9)

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	NCAP_HRSVA \| P03418	:	2wj8 2yhm 4bkk 4uc6 4uc7 4uc8 4uca 4ucb 4ucc 4ucd 4uce

4uc6	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc7	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc8	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PHENYLALANINE OF THE PHOSPHOPROTEIN
4uca	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucb	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucc	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M76
4ucd	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M81
4uce	N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M72

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 15)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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