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(-) Description

Title :  N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M76
 
Authors :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, M. -A. Tortoric B. Baron, P. England, F. Bontems, F. A. Rey, J. -F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
Date :  03 Dec 14  (Deposition) - 19 Aug 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Viral Protein, Respiratory Syncytial Virus, Ribonucleoprotein, Nucleocapsid, Phosphoprotein, Antiviral Compounds, Halogen Bond (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ouizougun-Oubari, N. Pereira, B. Tarus, M. Galloux, S. Lassoued, J. Fix, M. A. Tortorici, S. Hoos, B. Baron, P. England, D. Desmaele, P. Couvreur, F. Bontems, F. A. Rey, J. F. Eleouet, C. Sizun, A. Slama-Schwok, S. Duquerroy
A Druggable Pocket At The Nucleocapsid/Phosphoprotein Interaction Site Of The Human Respiratory Syncytial Virus.
J. Virol. V. 89 11129 2015
PubMed-ID: 26246564  |  Reference-DOI: 10.1128/JVI.01612-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL GLOBULAR DOMAIN, UNP RESIDUES 31-252
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2
    Organism Taxid: 11259
    Synonym: PROTEIN N, NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZKW2Ligand/Ion1-[(2,4-DICHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ZKW1Ligand/Ion1-[(2,4-DICHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ZKW1Ligand/Ion1-[(2,4-DICHLOROPHENYL)METHYL]PYRAZOLE-3,5-DICARBOXYLIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:128 , SER A:131 , ARG A:132 , TYR A:135 , ARG A:150 , HIS A:151 , HOH A:2055 , HOH A:2059 , HOH A:2070BINDING SITE FOR RESIDUE ZKW A 301
2AC2SOFTWARELYS B:46 , GLU B:128 , SER B:131 , ARG B:132 , TYR B:135 , ARG B:150 , HIS B:151 , HOH B:2046BINDING SITE FOR RESIDUE ZKW B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UCC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UCC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UCC)

(-) Exons   (0, 0)

(no "Exon" information available for 4UCC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.....ee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ucc A  31 DSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGL 253
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....eee...eeeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ucc B  31 DSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKHPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGLEHHHH 258
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UCC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UCC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UCC)

(-) Gene Ontology  (12, 12)

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 Related Entries

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UniProtKB/Swiss-Prot
        NCAP_HRSVA | P03418: 2wj8 2yhm 4bkk 4uc6 4uc7 4uc8 4uc9 4uca 4ucb 4ucd 4uce

(-) Related Entries Specified in the PDB File

4uc6 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc7 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN
4uc8 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PHENYLALANINE OF THE PHOSPHOPROTEIN
4uc9 N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL DIPEPTIDE OF THE PHOSPHOPROTEIN
4uca N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucb N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH C-TERMINAL PEPTIDE OF THE PHOSPHOPROTEIN
4ucd N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M81
4uce N-TERMINAL GLOBULAR DOMAIN OF THE RSV NUCLEOPROTEIN IN COMPLEX WITH THE NUCLEOPROTEIN PHOSPHOPROTEIN INTERACTION INHIBITOR M72