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(-) Description

Title :  ENSEMBLE REFINEMENT OF THE E502A VARIANT OF SACTELAM55A FROM STREPTOMYCES SP. SIREXAA-E IN COMPLEX WITH LAMINARIHEXAOSE
 
Authors :  C. M. Bianchetti, T. E. Takasuka, E. J. Yik, L. F. Bergeman, B. G. Fox
Date :  09 Jul 14  (Deposition) - 18 Mar 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B  (25x)
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Exo-Beta-1, 3-Glucanase, Beta-1, Gh55, Laminaritetraose, Secreted, Biomass Degradation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Bianchetti, T. E. Takasuka, S. Deutsch, H. S. Udell, E. J. Yik, L. F. Bergeman, B. G. Fox
Active Site And Laminarin Binding In Glycoside Hydrolase Family 55.
J. Biol. Chem. V. 290 11819 2015
PubMed-ID: 25752603  |  Reference-DOI: 10.1074/JBC.M114.623579

(-) Compounds

Molecule 1 - PUTATIVE SECRETED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP67K
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 57-605
    Gene: SACTE_4363
    Organism Scientific: STREPTOMYCES SP. SIREXAA-E
    Organism Taxid: 862751

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit (25x): AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1BGC22Ligand/IonBETA-D-GLUCOSE
2EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1BGC11Ligand/IonBETA-D-GLUCOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1BGC11Ligand/IonBETA-D-GLUCOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:482 , ASN A:483 , LYS A:484 , LYS A:503 , GLY A:520 , TYR A:521 , GLN A:552binding site for residue EDO A 701
2AC2SOFTWAREPHE B:482 , ASN B:483 , LYS B:484 , LYS B:503 , ILE B:513 , GLY B:520 , TYR B:521 , GLN B:552binding site for residue EDO B 701
3AC3SOFTWARETHR A:149 , PHE A:152 , GLN A:174 , TRP A:196 , TYR A:214 , SER A:215 , GLN A:217 , TRP A:446 , ASP A:449 , HIS A:450 , GLU A:480 , HIS A:481 , TYR A:505 , TYR A:543 , THR A:596 , HOH A:935 , HOH A:948 , HOH A:1109 , HOH A:1115binding site for Poly-Saccharide residues BGC A 702 through BGC A 707
4AC4SOFTWAREGLN A:114 , THR A:138 , ASP A:140 , GLY A:142 , ASP A:145 , GLY A:146 , THR A:149 , PHE A:152 , VAL A:164 , ASN A:165 , ARG A:169 , GLN A:174 , ASP A:192 , GLY A:193 , TRP A:196 , TYR A:214 , SER A:215 , GLN A:217 , TRP A:446 , ASP A:449 , HIS A:450 , GLU A:480 , HIS A:481 , TYR A:505 , TYR A:543 , THR A:596 , HOH A:933 , HOH A:935 , HOH A:948 , HOH A:971 , HOH A:1066 , HOH A:1109 , HOH A:1115 , HOH A:1132 , HOH A:1140 , HOH A:1144 , HOH A:1148 , HOH A:1155binding site for Poly-Saccharide residues BGC A 708 through BGC A 712
5AC5SOFTWAREGLN A:114 , THR A:138 , ASP A:140 , GLY A:142 , ASP A:145 , GLY A:146 , THR A:149 , PHE A:152 , VAL A:164 , ASN A:165 , ARG A:169 , GLN A:174 , ASP A:192 , GLY A:193 , TRP A:196 , TYR A:214 , SER A:215 , GLN A:217 , TRP A:446 , ASP A:449 , HIS A:450 , GLU A:480 , HIS A:481 , TYR A:505 , TYR A:543 , THR A:596 , HOH A:933 , HOH A:935 , HOH A:948 , HOH A:971 , HOH A:1066 , HOH A:1109 , HOH A:1115 , HOH A:1132 , HOH A:1140 , HOH A:1144 , HOH A:1148 , HOH A:1155 , ASN B:112 , GLN B:114 , THR B:138 , ASP B:140 , GLY B:142 , ASP B:145 , GLY B:146 , THR B:149 , GLN B:150 , PHE B:152 , VAL B:164 , ASN B:165 , ARG B:169 , GLN B:174 , ASP B:192 , GLY B:193 , TRP B:196 , TYR B:214 , SER B:215 , GLN B:217 , TRP B:446 , ASP B:449 , HIS B:450 , GLU B:480 , HIS B:481 , TYR B:505 , TYR B:543 , THR B:596 , HOH B:913 , HOH B:971 , HOH B:1025 , HOH B:1042 , HOH B:1055 , HOH B:1068 , HOH B:1070 , HOH B:1134 , HOH B:1144 , HOH B:1145 , HOH B:1153 , HOH B:1154binding site for Poly-Saccharide residues BGC B 702 through BGC B 707
6AC6SOFTWAREASN B:112 , GLN B:114 , THR B:138 , ASP B:140 , GLY B:142 , ASP B:145 , GLY B:146 , VAL B:164 , ASN B:165 , ARG B:169 , ASP B:192 , GLY B:193 , TRP B:196 , TYR B:214 , SER B:215 , GLN B:217 , TYR B:505 , TYR B:543 , THR B:596 , BGC B:707 , HOH B:913 , HOH B:971 , HOH B:1042 , HOH B:1055 , HOH B:1070 , HOH B:1134 , HOH B:1144 , HOH B:1145 , HOH B:1153 , HOH B:1154binding site for Poly-Saccharide residues BGC B 708 through BGC B 712

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TZ5)

(-) Cis Peptide Bonds  (8, 196)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Gly A:199 -Gly A:200
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:249 -Pro A:250
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Glu A:251 -Pro A:252
41, 2, 3, 4, 5, 6, 7, 8, 10, 11, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:604 -Pro A:605
51, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Gly B:199 -Gly B:200
61, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe B:249 -Pro B:250
71, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Glu B:251 -Pro B:252
81, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe B:604 -Pro B:605

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TZ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TZ5)

(-) Exons   (0, 0)

(no "Exon" information available for 4TZ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh.........eee..eee....eee........ee..ee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeee....eeeee..eeeeeee..eeee...........eeeee...eeee....hhhhhhhhhhh..eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee.......hhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tz5 A  57 EVVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALMFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRMHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNMTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNAKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGMGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596         


Chain B from PDB  Type:PROTEIN  Length:548
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh........eeee..eee....eee........ee..ee..eee............eee..ee...ee.....eeeee..ee........eeeee..............eeee..eeeee...eeee....eeee...eeeee.............eee...eeee....hhhhhhhhhhhh.eeee...eeee...eee.....eeee....eeee......eee......eee..eee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee......hhhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.hhh.ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tz5 B  58 VVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALMFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRMHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNMTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNAKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGMGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TZ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TZ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TZ5)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        LAM55_STREK | G2NFJ9: 4pew 4pex 4pey 4pez 4pf0 4tyv 4tz1 4tz3

(-) Related Entries Specified in the PDB File

4pf0 4tyv 4tz1 4tz3