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(-) Description

Title :  ENSEMBLE REFINEMENT OF THE E502A VARIANT OF SACTELAM55A FROM STREPTOMYCES SP. SIREXAA-E IN COMPLEX WITH GLUCOSE
 
Authors :  C. M. Bianchetti, T. E. Takasuka, E. J. Yik, L. F. Bergeman, B. G. Fox
Date :  09 Jul 14  (Deposition) - 18 Mar 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B  (25x)
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Exo-Beta-1, 3-Glucanase, Beta-1, Gh55, Glucose, Secreted, Biomass Degradation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Bianchetti, T. E. Takasuka, S. Deutsch, H. S. Udell, E. J. Yik, L. F. Bergeman, B. G. Fox
Active Site And Laminarin Binding In Glycoside Hydrolase Family 55.
J. Biol. Chem. V. 290 11819 2015
PubMed-ID: 25752603  |  Reference-DOI: 10.1074/JBC.M114.623579

(-) Compounds

Molecule 1 - PUTATIVE SECRETED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP67K
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SACTE_4363
    Organism Scientific: STREPTOMYCES SP. SIREXAA-E
    Organism Taxid: 862751

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit (25x): AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2EDO5Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1BGC-1Ligand/IonBETA-D-GLUCOSE
2EDO2Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:94 , GLY A:95 , ARG A:98 , TYR A:118 , THR A:358 , ASP A:384 , ARG A:418binding site for residue EDO A 701
2AC2SOFTWAREPHE A:482 , ASN A:483 , LYS A:484 , LYS A:503 , ILE A:513 , GLY A:520 , TYR A:521 , GLN A:552binding site for residue EDO A 702
3AC3SOFTWARETHR B:149 , GLN B:150 , PHE B:152 , GLN B:174 , TRP B:446 , ASP B:449 , HIS B:450 , GLU B:480 , HIS B:481 , TYR B:505binding site for residue BGC B 701
4AC4SOFTWAREPHE B:94 , GLY B:95 , ARG B:98 , TYR B:118 , THR B:358 , ASP B:384 , ARG B:418binding site for residue EDO B 702
5AC5SOFTWAREPHE B:482 , ASN B:483 , LYS B:484 , LYS B:503 , GLY B:520 , TYR B:521 , GLN B:552binding site for residue EDO B 703
6AC6SOFTWARELYS A:88 , GLN B:247 , ASP B:568 , HOH B:822 , HOH B:948binding site for residue EDO B 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYV)

(-) Cis Peptide Bonds  (8, 200)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Gly A:199 -Gly A:200
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:249 -Pro A:250
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Glu A:251 -Pro A:252
41, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:604 -Pro A:605
51, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Gly B:199 -Gly B:200
61, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe B:249 -Pro B:250
71, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Glu B:251 -Pro B:252
81, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe B:604 -Pro B:605

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TYV)

(-) Exons   (0, 0)

(no "Exon" information available for 4TYV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:548
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh.hhhhh..eeee..eee....eee........ee..ee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeee....eeee....eeeeee..eeee...........eeeee...eeee....hhhhhhhhhhhh.eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee......hhhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyv A  58 VVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALMFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRMHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNMTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNAKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGMGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597        


Chain B from PDB  Type:PROTEIN  Length:551
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee...............eeee..eee....eee........ee..ee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeee....eeee....eeeeee..eeee...........eeeee...eeee....hhhhhhhhhhh..eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee.......hhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyv B  55 AQEVVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALMFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRMHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNMTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNAKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGMGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYV)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LAM55_STREK | G2NFJ9: 4pew 4pex 4pey 4pez 4pf0 4tz1 4tz3 4tz5

(-) Related Entries Specified in the PDB File

4pex 4tz1 4tz3 4tz5