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(-) Description

Title :  ENSEMBLE REFINEMENT OF THE E502A VARIANT OF SACTELAM55A FROM STREPTOMYCES SP. SIREXAA-E IN COMPLEX WITH LAMINARITRIOSE
 
Authors :  C. M. Bianchetti, T. E. Takasuka, E. J. Yik, L. F. Bergeman, B. G. Fox
Date :  09 Jul 14  (Deposition) - 18 Mar 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A  (25x)
Biol. Unit 1:  A  (1x)
Keywords :  Exo-Beta-1, 3-Glucanase, Beta-1, Gh55, Laminaritriose, Secreted, Biomass Degradation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Bianchetti, T. E. Takasuka, S. Deutsch, H. S. Udell, E. J. Yik, L. F. Bergeman, B. G. Fox
Active Site And Laminarin Binding In Glycoside Hydrolase Family 55.
J. Biol. Chem. V. 290 11819 2015
PubMed-ID: 25752603  |  Reference-DOI: 10.1074/JBC.M114.623579

(-) Compounds

Molecule 1 - PUTATIVE SECRETED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP67K
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 57-605
    Gene: SACTE_4363
    Organism Scientific: STREPTOMYCES SP. SIREXAA-E
    Organism Taxid: 862751

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit (25x): A
Biological Unit 1 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1BGC6Ligand/IonBETA-D-GLUCOSE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1BGC6Ligand/IonBETA-D-GLUCOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:149 , GLN A:150 , PHE A:152 , GLN A:174 , TRP A:196 , GLN A:217 , TRP A:446 , ASP A:449 , HIS A:450 , GLU A:480 , HIS A:481 , TYR A:505 , TYR A:543 , LEU A:574 , THR A:596 , HOH A:948 , HOH A:995 , HOH A:1092binding site for Poly-Saccharide residues BGC A 701 through BGC A 703
2AC2SOFTWAREGLU A:90 , ASN A:112 , GLN A:114 , ASP A:140 , ALA A:141 , GLY A:142 , THR A:149 , VAL A:164 , ASN A:165 , ARG A:169 , TRP A:196 , GLN A:217 , TYR A:505 , TYR A:543 , LEU A:574 , THR A:596 , BGC A:701 , HOH A:946 , HOH A:948 , HOH A:968 , HOH A:1065 , HOH A:1076 , HOH A:1078 , HOH A:1092 , HOH A:1107binding site for Poly-Saccharide residues BGC A 704 through BGC A 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TZ1)

(-) Cis Peptide Bonds  (4, 100)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Gly A:199 -Gly A:200
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:249 -Pro A:250
31, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Glu A:251 -Pro A:252
41, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25Phe A:604 -Pro A:605

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TZ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TZ1)

(-) Exons   (0, 0)

(no "Exon" information available for 4TZ1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh........eeee..eee....eee........ee..ee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeee....eeeee..eeeeeee..eeee...........ee..hhh.eeee....hhhhhhhhhhhh.eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee.......hhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tz1 A  57 EVVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALMFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRMHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNMTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNAKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGMGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TZ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TZ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TZ1)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  4tz1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LAM55_STREK | G2NFJ9: 4pew 4pex 4pey 4pez 4pf0 4tyv 4tz3 4tz5

(-) Related Entries Specified in the PDB File

4pey 4tyv 4tz3 4tz5