4PEW - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF SACTELAM55A FROM STREPTOMYCES SP. SIREXAA-E

Authors :   C. M. Bianchetti, T. E. Takasuka, L. F. Bergeman, B. G. Fox

Date :   25 Apr 14 (Deposition) - 18 Mar 15 (Release) - 20 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.51

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Beta-1, 3-Glucanase, Secreted, Biomass Degradation, Gh55, Exo-Beta-1, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. M. Bianchetti, T. E. Takasuka, S. Deutsch, H. S. Udell, E. J. Yik, L. F. Bergeman, B. G. Fox
Active Site And Laminarin Binding In Glycoside Hydrolase Family 55.
J. Biol. Chem. V. 290 11819 2015
PubMed-ID: 25752603 | Reference-DOI: 10.1074/JBC.M114.623579

Molecule 1 - PUTATIVE SECRETED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP67K
	Expression System Strain	:	B834
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 46-605
	Gene	:	SACTE_4363
	Organism Scientific	:	STREPTOMYCES SP. SIREXAA-E
	Organism Taxid	:	862751

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MG	3	Ligand/Ion	MAGNESIUM ION
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:996 , HOH A:1004 , HOH A:1022 , HOH A:1038 , HOH A:1043 , HOH A:1066	binding site for residue MG A 701
2	AC2	SOFTWARE	HOH A:1115 , HOH A:1124 , HOH A:1187 , HOH A:1237 , HOH A:1270 , HOH A:1327	binding site for residue MG A 702
3	AC3	SOFTWARE	HOH B:1022 , HOH B:1034 , HOH B:1049 , HOH B:1062 , HOH B:1107 , HOH B:1111	binding site for residue MG B 701
4	AC4	SOFTWARE	PHE B:94 , GLY B:95 , ARG B:98 , TYR B:118 , THR B:358 , ASP B:384 , ARG B:418 , HOH B:1453	binding site for residue EDO B 702

(no "SS Bond" information available for 4PEW)

Asymmetric Unit

No.	Residues
1	Gly A:199	-	Gly A:200
2	Phe A:249	-	Pro A:250
3	Glu A:251	-	Pro A:252
4	Phe A:604	-	Pro A:605
5	Gly B:199	-	Gly B:200
6	Phe B:249	-	Pro B:250
7	Glu B:251	-	Pro B:252
8	Phe B:604	-	Pro B:605

(no "SAP(SNP)/Variant" information available for 4PEW)

(no "PROSITE Motif" information available for 4PEW)

(no "Exon" information available for 4PEW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:548
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh........eeeeeeeee....eee........eeeeee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeee....eeeee..eeeeeee..eeee...........eeeee...eeee....hhhhhhhhhhh..eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee.............eeeeeee.....eeeeeeee......eee....eeeeeeeee......hhhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pew A  58 VVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALmFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRmHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNmTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNEKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGmGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    67        77        87        97    |  107       117       127       137       147       157       167       177   |   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537|      547       557       567       577       587       597        
                                                                      102-MSE                                                                        181-MSE                                                236-MSE                                                                                                                                                                                                                                                                                                       538-MSE

Chain B from PDB  Type:PROTEIN  Length:549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee.....hhhhhhhhhhhhhh........eeeee..eeeeeeeee....eeeee...hhh.eeeeeeee..hhhhh........eeee..ee.....eee........ee..ee..eee............eee..eeeeeee.....eeeeeeeeeeee.....eeeeeeee...........eeee..eeeee...eeeee..eeeeeee.eeeee...........eeeee...eeee....hhhhhhhhhhh..eeee...eeee...eee.....eeee....eeee......eee......eeeeeeee.....eeeeeee..............eeeeeeeee.......eeeeeee.....eeeeeeeee...............eeeee.....eeeeeeee......eee....eeeeeeeee.......hhh.ee..ee....eee......eeeeeeeeee........ee...ee......eeeeeeeeee.....ee..................eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pew B  57 EVVGGGDLGPNVLVFDPSTPDIQGKVDEVFRKQESNQFGTDRYALmFKPGTYNDINAQIGFYTSIAGLGLNPDDTTFNGDVTVDAGWFDGNATQNFWRSAENLALNPVNGTNRWAVSQAAPFRRmHVKGGLNLAPDGYGWASGGYIADSKIDGEVGPYSQQQWYTRDSSVGGWGNGVWNmTFSGVEGAPAQSFPEPPYTTLETTPVSREKPFLYLDGDDYKVFVPAKRTNARGTSWGNGTPEGESLPLDQFYVVKPGATAETINAAVDQGLHLLFTPGVYHVDQPIEIDRANTVALGLGLATIIPDNGVTALKVGDVDGVKVAGLLVDAGPVNSETLVEVGSDGASGDHAANPTSLQDVFVRIGGAGPGKATTSIVVNSNDTIIDHTWVWRADHGEGVGWETNRADYGVHVKGDNVLATGLFVEHFNKYDVQWSGENGKTIFYQNEKAYDAPDQAAIQNGDIKGYAAYKVDDSVTTHEGWGmGSYCYFNVNPDIRQQHGFQAPVKPGVKFHDLLVVSLGGKGQYEHVINDIGDPTSGDTTIPSQVVSFP 605
                                    66        76        86        96     | 106       116       126       136       146       156       166       176    |  186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536 |     546       556       566       576       586       596         
                                                                       102-MSE                                                                        181-MSE                                                236-MSE                                                                                                                                                                                                                                                                                                       538-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4PEW)

(no "CATH Domain" information available for 4PEW)

(no "Pfam Domain" information available for 4PEW)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Glu A:251 - Pro A:252	[ RasMol ]
		Glu B:251 - Pro B:252	[ RasMol ]
		Gly A:199 - Gly A:200	[ RasMol ]
		Gly B:199 - Gly B:200	[ RasMol ]
		Phe A:249 - Pro A:250	[ RasMol ]
		Phe A:604 - Pro A:605	[ RasMol ]
		Phe B:249 - Pro B:250	[ RasMol ]
		Phe B:604 - Pro B:605	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	LAM55_STREK \| G2NFJ9	:	4pex 4pey 4pez 4pf0 4tyv 4tz1 4tz3 4tz5

Description

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Ligands, Modified Residues, Ions (3, 12)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 9)

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