4TSP - JenaLib

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Title :   CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM II)

Authors :   J. M. M. Caaveiro, K. Tanaka, K. Tsumoto

Date :   19 Jun 14 (Deposition) - 04 Mar 15 (Release) - 03 Aug 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Toxin, Actinoporin Pore-Forming Toxin, Membrane, Lipids Phosphocholine, Lipid-Protein Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tanaka, J. M. M. Caaveiro, K. Morante, J. M. Gonzalez-Manas, K. Tsumoto
Structural Basis For Self-Assembly Of A Cytolytic Pore Line By Protein And Lipid
Nat Commun V. 6 6337 2015
PubMed-ID: 25716479 | Reference-DOI: 10.1038/NCOMMS7337
(for further references see the PDB file header)

Molecule 1 - FRAGACEATOXIN C
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PGEM-T
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	STRAWBERRY ANEMONE
	Organism Scientific	:	ACTINIA FRAGACEA
	Organism Taxid	:	396334
	Synonym	:	FRAC

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 15)

No.	Name	Count	Type	Full Name
1	HXG	4	Ligand/Ion	1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
2	PC	1	Ligand/Ion	PHOSPHOCHOLINE
3	PO4	7	Ligand/Ion	PHOSPHATE ION
4	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	HXG	2	Ligand/Ion	1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
2	PC	-1	Ligand/Ion	PHOSPHOCHOLINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	HXG	2	Ligand/Ion	1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
2	PC	-1	Ligand/Ion	PHOSPHOCHOLINE
3	PO4	5	Ligand/Ion	PHOSPHATE ION
4	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:112 , TYR A:113 , TRP A:116 , TYR A:137 , TYR A:138 , HOH A:348 , HOH A:363 , PRO B:81	binding site for residue HXG A 201
02	AC2	SOFTWARE	SER A:54 , ALA A:83 , THR A:84 , GLY A:85 , SER A:105 , PRO A:107 , TYR A:108 , ASP A:109 , TRP A:112 , TYR A:113 , TYR A:133 , TYR A:137 , HOH A:341 , TRP B:112 , HXG B:202 , HXG B:203	binding site for residue HXG A 202
03	AC3	SOFTWARE	ARG A:120 , TYR A:122 , LYS A:123 , HOH A:310 , HOH A:323 , ARG B:127	binding site for residue SO4 A 203
04	AC4	SOFTWARE	VAL A:29 , LYS A:30 , LYS A:77 , ARG A:79 , HIS B:139	binding site for residue PO4 A 204
05	AC5	SOFTWARE	ARG A:53 , GLN A:130 , TYR A:133 , TYR A:138 , HOH A:320	binding site for residue PO4 A 205
06	AC6	SOFTWARE	LYS A:30 , ARG A:31 , HOH A:322 , GLY B:27 , ASN B:28 , ARG B:79	binding site for residue SO4 B 201
07	AC7	SOFTWARE	TRP A:112 , HXG A:202 , SER B:54 , ALA B:83 , THR B:84 , GLY B:85 , SER B:105 , PRO B:107 , TYR B:108 , TYR B:113 , TYR B:133 , TYR B:137 , TYR B:138 , HXG B:203 , PO4 B:206 , HOH B:335	binding site for residue HXG B 202
08	AC8	SOFTWARE	PRO A:81 , HXG A:202 , TRP B:112 , TYR B:113 , TRP B:116 , TYR B:137 , TYR B:138 , HXG B:202 , PO4 B:209 , HOH B:330 , HOH B:332 , HOH B:348	binding site for residue HXG B 203
09	AC9	SOFTWARE	TYR A:110 , ASN B:28 , VAL B:29 , LYS B:30 , LYS B:77 , ARG B:79 , GLY B:80	binding site for residue SO4 B 204
10	AD1	SOFTWARE	ARG B:120 , TYR B:122 , LYS B:123	binding site for residue PO4 B 205
11	AD2	SOFTWARE	ARG B:53 , TYR B:133 , TYR B:138 , HXG B:202	binding site for residue PO4 B 206
12	AD3	SOFTWARE	ARG B:31	binding site for residue PO4 B 207
13	AD4	SOFTWARE	HIS B:169 , HOH B:308	binding site for residue PO4 B 208
14	AD5	SOFTWARE	SER B:114 , TRP B:116 , ARG B:144 , HXG B:203 , HOH B:332 , HOH B:348	binding site for residue PO4 B 209
15	AD6	SOFTWARE	PHE B:16 , LYS B:20 , GLU B:24 , ASN B:147 , HOH B:306	binding site for residue PC B 210

(no "SS Bond" information available for 4TSP)

(no "Cis Peptide Bond" information available for 4TSP)

(no "SAP(SNP)/Variant" information available for 4TSP)

(no "PROSITE Motif" information available for 4TSP)

(no "Exon" information available for 4TSP)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.hhhhhhhhhhhhhhh.....eeeeeeee.....eeeeeeeeee.........ee...eeeeeeee.........eeeeeeeee....eeeeeeee.........eeeeeee......hhhhhhhhhhh...ee....eeeeeee..eeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tsp A   3 DVAGAVIDGAGLGFDVLKTVLEALGNVKRKIAVGIDNESGKTWTAMNTYFRSGTSDIVLPHKVAHGKALLYNGQKNRGPVATGVVGVIAYSMSDGNTLAVLFSVPYDYNWYSNWWNVRVYKGQKRADQRMYEELYYHRSPFRGDNGWHSRGLGYGLKSRGFMNSSGHAILEIHVTKA 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.hhhhhhhhhhhhhhh.....eeeeeeeee....eeeeeeeeee.........ee...eeeeeeee.........eeeeeeeee....eeeeeeee.........eeeeeee......hhhhhhhhhhh...ee...eeeeeeee..eeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tsp B   3 DVAGAVIDGAGLGFDVLKTVLEALGNVKRKIAVGIDNESGKTWTAMNTYFRSGTSDIVLPHKVAHGKALLYNGQKNRGPVATGVVGVIAYSMSDGNTLAVLFSVPYDYNWYSNWWNVRVYKGQKRADQRMYEELYYHRSPFRGDNGWHSRGLGYGLKSRGFMNSSGHAILEIHVTKA 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4TSP)

(no "CATH Domain" information available for 4TSP)

(no "Pfam Domain" information available for 4TSP)

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	4tsp
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	ACTPC_ACTFR \| B9W5G6	:	3lim 3vwi 3w9p 3zwg 3zwj 4tsl 4tsn 4tso 4tsq 4tsy 4wdc 5bpg 5gwf

3vwi	THE SAME PROTEIN IN THE WATER-SOLUBLE STATE (CRYSTAL FORM I)
3wp9	THE SAME PROTEIN IN THE WATER-SOLUBLE STATE (CRYSTAL FORM II)
4tsl
4tsn
4tso
4tsq
4tsy

Description

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Ligands, Modified Residues, Ions (4, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Gene Ontology (16, 16)

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