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4TSP
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FRAC WITH DHPC BOUND (CRYSTAL FORM II)
Authors
:
J. M. M. Caaveiro, K. Tanaka, K. Tsumoto
Date
:
19 Jun 14 (Deposition) - 04 Mar 15 (Release) - 03 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Toxin, Actinoporin Pore-Forming Toxin, Membrane, Lipids Phosphocholine, Lipid-Protein Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tanaka, J. M. M. Caaveiro, K. Morante, J. M. Gonzalez-Manas, K. Tsumoto
Structural Basis For Self-Assembly Of A Cytolytic Pore Line By Protein And Lipid
Nat Commun V. 6 6337 2015
(for further references see the
PDB file header
)
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGa)
1b: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGb)
1c: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGc)
1d: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (HXGd)
2a: PHOSPHOCHOLINE (PCa)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HXG
4
Ligand/Ion
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
2
PC
1
Ligand/Ion
PHOSPHOCHOLINE
3
PO4
7
Ligand/Ion
PHOSPHATE ION
4
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:112 , TYR A:113 , TRP A:116 , TYR A:137 , TYR A:138 , HOH A:348 , HOH A:363 , PRO B:81
binding site for residue HXG A 201
02
AC2
SOFTWARE
SER A:54 , ALA A:83 , THR A:84 , GLY A:85 , SER A:105 , PRO A:107 , TYR A:108 , ASP A:109 , TRP A:112 , TYR A:113 , TYR A:133 , TYR A:137 , HOH A:341 , TRP B:112 , HXG B:202 , HXG B:203
binding site for residue HXG A 202
03
AC3
SOFTWARE
ARG A:120 , TYR A:122 , LYS A:123 , HOH A:310 , HOH A:323 , ARG B:127
binding site for residue SO4 A 203
04
AC4
SOFTWARE
VAL A:29 , LYS A:30 , LYS A:77 , ARG A:79 , HIS B:139
binding site for residue PO4 A 204
05
AC5
SOFTWARE
ARG A:53 , GLN A:130 , TYR A:133 , TYR A:138 , HOH A:320
binding site for residue PO4 A 205
06
AC6
SOFTWARE
LYS A:30 , ARG A:31 , HOH A:322 , GLY B:27 , ASN B:28 , ARG B:79
binding site for residue SO4 B 201
07
AC7
SOFTWARE
TRP A:112 , HXG A:202 , SER B:54 , ALA B:83 , THR B:84 , GLY B:85 , SER B:105 , PRO B:107 , TYR B:108 , TYR B:113 , TYR B:133 , TYR B:137 , TYR B:138 , HXG B:203 , PO4 B:206 , HOH B:335
binding site for residue HXG B 202
08
AC8
SOFTWARE
PRO A:81 , HXG A:202 , TRP B:112 , TYR B:113 , TRP B:116 , TYR B:137 , TYR B:138 , HXG B:202 , PO4 B:209 , HOH B:330 , HOH B:332 , HOH B:348
binding site for residue HXG B 203
09
AC9
SOFTWARE
TYR A:110 , ASN B:28 , VAL B:29 , LYS B:30 , LYS B:77 , ARG B:79 , GLY B:80
binding site for residue SO4 B 204
10
AD1
SOFTWARE
ARG B:120 , TYR B:122 , LYS B:123
binding site for residue PO4 B 205
11
AD2
SOFTWARE
ARG B:53 , TYR B:133 , TYR B:138 , HXG B:202
binding site for residue PO4 B 206
12
AD3
SOFTWARE
ARG B:31
binding site for residue PO4 B 207
13
AD4
SOFTWARE
HIS B:169 , HOH B:308
binding site for residue PO4 B 208
14
AD5
SOFTWARE
SER B:114 , TRP B:116 , ARG B:144 , HXG B:203 , HOH B:332 , HOH B:348
binding site for residue PO4 B 209
15
AD6
SOFTWARE
PHE B:16 , LYS B:20 , GLU B:24 , ASN B:147 , HOH B:306
binding site for residue PC B 210
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (133 KB)
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