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4R85
Biol. Unit 4
Info
Asym.Unit (871 KB)
Biol.Unit 1 (291 KB)
Biol.Unit 2 (293 KB)
Biol.Unit 3 (293 KB)
Biol.Unit 4 (861 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-METHYLCYTOSINE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date
:
29 Aug 14 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,E (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Methylcytosine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Methylcytosine
To Be Published
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close entry info
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Hetero Components
(3, 30)
Info
All Hetero Components
1a: 5-METHYLCYTOSINE (17Ea)
1b: 5-METHYLCYTOSINE (17Eb)
1c: 5-METHYLCYTOSINE (17Ec)
1d: 5-METHYLCYTOSINE (17Ed)
1e: 5-METHYLCYTOSINE (17Ee)
1f: 5-METHYLCYTOSINE (17Ef)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
2e: FE (II) ION (FE2e)
2f: FE (II) ION (FE2f)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
17E
6
Ligand/Ion
5-METHYLCYTOSINE
2
FE2
6
Ligand/Ion
FE (II) ION
3
GOL
18
Ligand/Ion
GLYCEROL
[
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , HIS A:209 , GLU A:212 , HIS A:241 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:601
BINDING SITE FOR RESIDUE 17E A 501
02
AC2
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 17E A:501
BINDING SITE FOR RESIDUE FE2 A 502
03
AC3
SOFTWARE
ARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:647 , HOH A:669 , HOH A:715 , HOH A:746
BINDING SITE FOR RESIDUE GOL A 503
04
AC4
SOFTWARE
PRO A:123 , LEU A:125 , ARG A:166 , HOH A:833
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
ASP A:327 , ALA A:328 , HOH A:828 , HOH A:894 , ASP D:327 , ALA D:328 , HIS D:331
BINDING SITE FOR RESIDUE GOL A 505
06
AC6
SOFTWARE
HIS B:58 , LEU B:76 , PHE B:149 , GLN B:151 , ILE B:178 , HIS B:209 , GLU B:212 , HIS B:241 , GLU B:273 , ASP B:308 , SER B:309 , TRP B:314 , FE2 B:502 , HOH B:610
BINDING SITE FOR RESIDUE 17E B 501
07
AC7
SOFTWARE
HIS B:56 , HIS B:58 , HIS B:209 , HIS B:241 , ASP B:308 , 17E B:501
BINDING SITE FOR RESIDUE FE2 B 502
08
AC8
SOFTWARE
PRO B:92 , GLU B:93 , ALA B:130 , HOH B:670
BINDING SITE FOR RESIDUE GOL B 503
09
AC9
SOFTWARE
SER B:254 , PHE B:257 , ARG B:292 , GLU B:295 , HOH B:611 , HOH B:662 , HOH B:747 , HOH B:785
BINDING SITE FOR RESIDUE GOL B 504
10
BC1
SOFTWARE
ARG B:185 , GLN B:217 , ARG B:219 , PHE B:220 , GLU B:222 , VAL B:223 , HOH B:635 , HOH B:700 , HOH B:738 , HOH B:743
BINDING SITE FOR RESIDUE GOL B 505
11
BC2
SOFTWARE
GLN B:145 , ASP B:173 , LEU B:356 , CYS B:357
BINDING SITE FOR RESIDUE GOL B 506
12
BC3
SOFTWARE
HIS C:58 , LEU C:76 , PHE C:149 , GLN C:151 , ILE C:178 , HIS C:209 , GLU C:212 , HIS C:241 , GLU C:273 , ASP C:308 , SER C:309 , TRP C:314 , FE2 C:502 , HOH C:621
BINDING SITE FOR RESIDUE 17E C 501
13
BC4
SOFTWARE
HIS C:56 , HIS C:58 , HIS C:209 , HIS C:241 , ASP C:308 , 17E C:501
BINDING SITE FOR RESIDUE FE2 C 502
14
BC5
SOFTWARE
ASP C:327 , ALA C:328 , ASP E:327 , ALA E:328 , HIS E:331 , HOH E:882
BINDING SITE FOR RESIDUE GOL C 503
15
BC6
SOFTWARE
ARG C:185 , GLN C:217 , ARG C:219 , PHE C:220 , GLU C:222 , VAL C:223 , HOH C:645 , HOH C:801
BINDING SITE FOR RESIDUE GOL C 504
16
BC7
SOFTWARE
SER C:254 , PHE C:257 , ARG C:292 , GLU C:295 , HOH C:618 , HOH C:647 , HOH E:706
BINDING SITE FOR RESIDUE GOL C 505
17
BC8
SOFTWARE
HIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , HIS D:241 , GLU D:273 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:604
BINDING SITE FOR RESIDUE 17E D 501
18
BC9
SOFTWARE
HIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 17E D:501
BINDING SITE FOR RESIDUE FE2 D 502
19
CC1
SOFTWARE
SER D:254 , PHE D:257 , ARG D:292 , GLU D:295 , HOH D:618 , HOH D:625 , HOH D:783
BINDING SITE FOR RESIDUE GOL D 503
20
CC2
SOFTWARE
ARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:645 , HOH D:666 , HOH D:707 , HOH D:740
BINDING SITE FOR RESIDUE GOL D 504
21
CC3
SOFTWARE
HIS E:58 , LEU E:76 , PHE E:149 , GLN E:151 , ILE E:178 , GLU E:212 , HIS E:241 , GLU E:273 , ASP E:308 , SER E:309 , TRP E:314 , FE2 E:502 , HOH E:617
BINDING SITE FOR RESIDUE 17E E 501
22
CC4
SOFTWARE
HIS E:56 , HIS E:58 , HIS E:209 , HIS E:241 , ASP E:308 , 17E E:501
BINDING SITE FOR RESIDUE FE2 E 502
23
CC5
SOFTWARE
ARG E:185 , GLN E:217 , ARG E:219 , PHE E:220 , GLU E:222 , VAL E:223 , HOH E:618 , HOH E:751 , HOH E:764
BINDING SITE FOR RESIDUE GOL E 503
24
CC6
SOFTWARE
SER E:254 , PHE E:257 , ARG E:292 , GLU E:295 , HOH E:619 , HOH E:776 , HOH E:802
BINDING SITE FOR RESIDUE GOL E 504
25
CC7
SOFTWARE
HIS E:113 , ASP E:143 , ASN E:361 , PRO E:369 , ASN E:371 , ARG E:395 , HIS E:396 , HOH E:841
BINDING SITE FOR RESIDUE GOL E 505
26
CC8
SOFTWARE
ASP B:327 , ALA B:328 , HIS B:331 , ASP F:327 , ALA F:328 , HOH F:878
BINDING SITE FOR RESIDUE GOL F 501
27
CC9
SOFTWARE
HIS F:58 , LEU F:76 , PHE F:149 , GLN F:151 , ILE F:178 , HIS F:209 , GLU F:212 , HIS F:241 , GLU F:273 , ASP F:308 , SER F:309 , TRP F:314 , FE2 F:503 , HOH F:620
BINDING SITE FOR RESIDUE 17E F 502
28
DC1
SOFTWARE
HIS F:56 , HIS F:58 , HIS F:209 , HIS F:241 , ASP F:308 , 17E F:502
BINDING SITE FOR RESIDUE FE2 F 503
29
DC2
SOFTWARE
ARG F:185 , GLN F:217 , ARG F:219 , PHE F:220 , GLU F:222 , VAL F:223 , HOH F:650 , HOH F:793
BINDING SITE FOR RESIDUE GOL F 504
30
DC3
SOFTWARE
HOH B:705 , SER F:254 , PHE F:257 , ARG F:292 , GLU F:295 , HOH F:631
BINDING SITE FOR RESIDUE GOL F 505
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Asym.Unit (871 KB)
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Biol.Unit 1 (291 KB)
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Biol.Unit 3 (293 KB)
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