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4R85
Biol. Unit 1
Info
Asym.Unit (871 KB)
Biol.Unit 1 (291 KB)
Biol.Unit 2 (293 KB)
Biol.Unit 3 (293 KB)
Biol.Unit 4 (861 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 5-METHYLCYTOSINE DEAMINASE FROM KLEBSIELLA PNEUMONIAE LIGANDED WITH 5-METHYLCYTOSINE
Authors
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Date
:
29 Aug 14 (Deposition) - 17 Sep 14 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,E (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Amidohydrolase Fold, 5-Methylcytosine Deaminase, 5-Methylcytosine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, D. S. Hitchcock, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Methylcytosine Deaminase From Klebsiella Pneumoniae Liganded With 5-Methylcytosine
To Be Published
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: 5-METHYLCYTOSINE (17Ea)
1b: 5-METHYLCYTOSINE (17Eb)
1c: 5-METHYLCYTOSINE (17Ec)
1d: 5-METHYLCYTOSINE (17Ed)
1e: 5-METHYLCYTOSINE (17Ee)
1f: 5-METHYLCYTOSINE (17Ef)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
2e: FE (II) ION (FE2e)
2f: FE (II) ION (FE2f)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
17E
2
Ligand/Ion
5-METHYLCYTOSINE
2
FE2
2
Ligand/Ion
FE (II) ION
3
GOL
5
Ligand/Ion
GLYCEROL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: BC8 (SOFTWARE)
7: BC9 (SOFTWARE)
8: CC1 (SOFTWARE)
9: CC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:58 , LEU A:76 , PHE A:149 , GLN A:151 , ILE A:178 , HIS A:209 , GLU A:212 , HIS A:241 , GLU A:273 , ASP A:308 , SER A:309 , TRP A:314 , FE2 A:502 , HOH A:601
BINDING SITE FOR RESIDUE 17E A 501
2
AC2
SOFTWARE
HIS A:56 , HIS A:58 , HIS A:209 , HIS A:241 , ASP A:308 , 17E A:501
BINDING SITE FOR RESIDUE FE2 A 502
3
AC3
SOFTWARE
ARG A:185 , GLN A:217 , ARG A:219 , PHE A:220 , GLU A:222 , VAL A:223 , HOH A:647 , HOH A:669 , HOH A:715 , HOH A:746
BINDING SITE FOR RESIDUE GOL A 503
4
AC4
SOFTWARE
PRO A:123 , LEU A:125 , ARG A:166 , HOH A:833
BINDING SITE FOR RESIDUE GOL A 504
5
AC5
SOFTWARE
ASP A:327 , ALA A:328 , HOH A:828 , HOH A:894 , ASP D:327 , ALA D:328 , HIS D:331
BINDING SITE FOR RESIDUE GOL A 505
6
BC8
SOFTWARE
HIS D:58 , LEU D:76 , PHE D:149 , GLN D:151 , ILE D:178 , GLU D:212 , HIS D:241 , GLU D:273 , ASP D:308 , SER D:309 , TRP D:314 , FE2 D:502 , HOH D:604
BINDING SITE FOR RESIDUE 17E D 501
7
BC9
SOFTWARE
HIS D:56 , HIS D:58 , HIS D:209 , HIS D:241 , ASP D:308 , 17E D:501
BINDING SITE FOR RESIDUE FE2 D 502
8
CC1
SOFTWARE
SER D:254 , PHE D:257 , ARG D:292 , GLU D:295 , HOH D:618 , HOH D:625 , HOH D:783
BINDING SITE FOR RESIDUE GOL D 503
9
CC2
SOFTWARE
ARG D:185 , GLN D:217 , ARG D:219 , PHE D:220 , GLU D:222 , VAL D:223 , HOH D:645 , HOH D:666 , HOH D:707 , HOH D:740
BINDING SITE FOR RESIDUE GOL D 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (871 KB)
Header - Asym.Unit
Biol.Unit 1 (291 KB)
Header - Biol.Unit 1
Biol.Unit 2 (293 KB)
Header - Biol.Unit 2
Biol.Unit 3 (293 KB)
Header - Biol.Unit 3
Biol.Unit 4 (861 KB)
Header - Biol.Unit 4
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