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(-) Description

Title :  CRYSTAL STRUCTURE OF GOAT LACTOPEROXIDASE IN COMPLEX WITH OCTOPAMINE AT 2.1 ANGSTROM RESOLUTION
 
Authors :  R. P. Singh, G. S. Kushwaha, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P
Date :  04 Jun 14  (Deposition) - 18 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Lactoperoxidase, Oxidoreductase, Peroxidase, Oxidoreductase-Oxido Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. P. Singh, G. S. Kushwaha, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Goat Lactoperoxidase In Complex With Octopamine At 2. 1 Angstrom Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOPEROXIDASE
    Chains: A
    EC Number: 1.11.1.7
    Organism Common: DOMESTIC GOAT,GOATS
    Organism Scientific: CAPRA HIRCUS
    Organism Taxid: 9925

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 26)

Asymmetric/Biological Unit (9, 26)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4IOD13Ligand/IonIODIDE ION
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6OTR1Ligand/Ion4-(2R-AMINO-1-HYDROXYETHYL)PHENOL
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
8SCN1Ligand/IonTHIOCYANATE ION
9SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , LEU A:417 , LEU A:433 , ILE A:436 , ARG A:440 , OTR A:614 , HOH A:718 , HOH A:792 , HOH A:904 , HOH A:937BINDING SITE FOR RESIDUE HEM A 601
02AC2SOFTWAREASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , HOH A:735 , HOH A:863 , HOH A:885BINDING SITE FOR RESIDUE NAG A 602
03AC3SOFTWAREASN A:95 , ARG A:96 , ILE A:315 , GLN A:568 , HOH A:917BINDING SITE FOR RESIDUE NAG A 603
04AC4SOFTWAREASN A:332 , SER A:334 , HOH A:734 , HOH A:760BINDING SITE FOR RESIDUE NAG A 604
05AC5SOFTWAREASN A:205 , SER A:208 , LEU A:210 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:702 , HOH A:782 , HOH A:927 , HOH A:1005BINDING SITE FOR RESIDUE NAG A 605
06AC6SOFTWAREASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190BINDING SITE FOR RESIDUE CA A 606
07AC7SOFTWARETRP A:46 , VAL A:342 , TRP A:452BINDING SITE FOR RESIDUE IOD A 607
08AC8SOFTWAREPRO A:145BINDING SITE FOR RESIDUE IOD A 610
09AC9SOFTWAREHIS A:565 , ALA A:566 , PHE A:567BINDING SITE FOR RESIDUE IOD A 612
10BC1SOFTWAREASN A:230 , VAL A:232BINDING SITE FOR RESIDUE SCN A 613
11BC2SOFTWAREHIS A:109 , ARG A:255 , GLU A:258 , PHE A:381 , GLN A:423 , PRO A:424 , HEM A:601 , HOH A:718 , HOH A:937 , HOH A:971BINDING SITE FOR RESIDUE OTR A 614
12BC3SOFTWAREARG A:76 , ASN A:80 , PRO A:149 , LYS A:150 , ARG A:418 , ASN A:419BINDING SITE FOR RESIDUE PEG A 615
13BC4SOFTWAREARG A:45 , TRP A:46 , LEU A:47 , PRO A:48 , HOH A:796BINDING SITE FOR RESIDUE PEG A 616
14BC5SOFTWARELYS A:462 , THR A:463BINDING SITE FOR RESIDUE IOD A 617
15BC6SOFTWAREALA A:225BINDING SITE FOR RESIDUE IOD A 618
16BC7SOFTWAREARG A:397 , THR A:560BINDING SITE FOR RESIDUE IOD A 620
17BC8SOFTWAREARG A:96 , HOH A:993BINDING SITE FOR RESIDUE IOD A 621
18BC9SOFTWARESER A:359BINDING SITE FOR RESIDUE IOD A 622
19CC1SOFTWAREARG A:202BINDING SITE FOR RESIDUE IOD A 623
20CC2SOFTWAREALA A:35 , LEU A:36 , ARG A:41 , HOH A:873BINDING SITE FOR RESIDUE EDO A 624
21CC3SOFTWAREHIS A:377 , HIS A:429 , HOH A:988BINDING SITE FOR RESIDUE EDO A 625

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:167
2A:15 -A:28
3A:129 -A:139
4A:133 -A:157
5A:237 -A:248
6A:456 -A:513
7A:554 -A:579

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:10 -Pro A:11
2Pro A:170 -Pro A:171
3Lys A:233 -Pro A:234
4Tyr A:572 -Pro A:573

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QJQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QJQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QJQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:595
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................ee...............................hhhhhhhhhh........eeeeeehhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........ee....hhhhhhhh.ee.....................ee.......hhhhhh.hhhhhhhhh..............................hhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..............hhhhhhhhhhhhhhh..eee.............eee.hhhh..hhhhhh...hhhhhhhhhhheee........hhhhhh............hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhh....ee..............ee.hhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qjq A   1 SWEVGCGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPsLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSAVDKLDLSPWASREN 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     
                                                                                                                                                                                                                               198-SEP
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QJQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QJQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QJQ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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        A3F9D6_CAPHI | A3F9D6: 2e9e 2efb 2eha 2ojv 2r5l 3n8f 3nak 3niu 3qf1 3r55 3rke 3sxv 4ig5 4ljj 4msf 4n7a 4oek 4qyq 5ff1 5hpw

(-) Related Entries Specified in the PDB File

4oek