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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF GOAT LACTOPEROXIDASE WITH PHENYLETHYLAMINE AT 2.47 A RESOLUTION
 
Authors :  M. Kumar, R. P. Singh, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, T. P. Sing
Date :  13 Jan 14  (Deposition) - 22 Jan 14  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Peroxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kumar, R. P. Singh, M. Sinha, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Goat Lactoperoxidase With Phenylethylamine At 2. 47 A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOPEROXIDASE
    Chains: A
    EC Number: 1.11.1.7
    Fragment: UNP RESIDUES 118-712
    Organism Common: DOMESTIC GOAT,GOATS
    Organism Scientific: CAPRA HIRCUS
    Organism Taxid: 9925

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 28)

Asymmetric/Biological Unit (8, 28)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EDO5Ligand/Ion1,2-ETHANEDIOL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4IOD13Ligand/IonIODIDE ION
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PEA1Ligand/Ion2-PHENYLETHYLAMINE
7SCN1Ligand/IonTHIOCYANATE ION
8SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:95 , PRO A:209 , ILE A:315BINDING SITE FOR RESIDUE NAG A 601
02AC2SOFTWAREASN A:205 , SER A:208 , LEU A:210 , VAL A:215 , GLN A:217BINDING SITE FOR RESIDUE NAG A 602
03AC3SOFTWAREASN A:241 , ALA A:244 , TRP A:384 , NAG A:604 , HOH A:748BINDING SITE FOR RESIDUE NAG A 603
04AC4SOFTWARENAG A:603 , HOH A:761BINDING SITE FOR RESIDUE NAG A 604
05AC5SOFTWAREASN A:332 , HOH A:894BINDING SITE FOR RESIDUE NAG A 605
06AC6SOFTWAREMET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , GLN A:423 , ILE A:436 , ARG A:440 , PEA A:627 , HOH A:866 , HOH A:950BINDING SITE FOR RESIDUE HEM A 606
07AC7SOFTWAREASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190BINDING SITE FOR RESIDUE CA A 607
08AC8SOFTWAREALA A:44 , TRP A:46 , VAL A:342 , TRP A:452BINDING SITE FOR RESIDUE IOD A 608
09AC9SOFTWAREARG A:397 , THR A:560BINDING SITE FOR RESIDUE IOD A 610
10BC1SOFTWAREASN A:80BINDING SITE FOR RESIDUE IOD A 611
11BC2SOFTWAREARG A:96BINDING SITE FOR RESIDUE IOD A 612
12BC3SOFTWARELEU A:12 , LYS A:462 , THR A:463BINDING SITE FOR RESIDUE IOD A 614
13BC4SOFTWAREHIS A:565 , PHE A:567 , HOH A:813BINDING SITE FOR RESIDUE IOD A 615
14BC5SOFTWAREALA A:225 , HOH A:719BINDING SITE FOR RESIDUE IOD A 616
15BC6SOFTWAREPRO A:236 , THR A:425BINDING SITE FOR RESIDUE IOD A 618
16BC7SOFTWARETYR A:331BINDING SITE FOR RESIDUE IOD A 619
17BC8SOFTWARELYS A:465BINDING SITE FOR RESIDUE IOD A 620
18BC9SOFTWAREASN A:230 , CYS A:248 , HOH A:785 , HOH A:791BINDING SITE FOR RESIDUE SCN A 621
19CC1SOFTWAREHIS A:377 , HIS A:429BINDING SITE FOR RESIDUE EDO A 622
20CC2SOFTWAREALA A:35 , LEU A:36 , ARG A:338 , HOH A:746 , HOH A:846BINDING SITE FOR RESIDUE EDO A 623
21CC3SOFTWAREPRO A:197BINDING SITE FOR RESIDUE EDO A 624
22CC4SOFTWAREALA A:219 , PHE A:229 , VAL A:246BINDING SITE FOR RESIDUE EDO A 625
23CC5SOFTWARESER A:359 , LEU A:361 , ALA A:372 , GLU A:373 , LYS A:402BINDING SITE FOR RESIDUE EDO A 626
24CC6SOFTWAREHIS A:109 , ARG A:255 , GLU A:258 , PHE A:381 , PRO A:424 , HEM A:606 , HOH A:950BINDING SITE FOR RESIDUE PEA A 627

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:167
2A:15 -A:28
3A:129 -A:139
4A:133 -A:157
5A:237 -A:248
6A:456 -A:513
7A:554 -A:579

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:233 -Pro A:234
2Tyr A:572 -Pro A:573

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OEK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OEK)

(-) Exons   (0, 0)

(no "Exon" information available for 4OEK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:595
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................ee...............................hhhhhhhhh.........eeeeeehhhhhhhhhhhhhhh..........hhhhhhhhh..........ee......hhhhhh.ee.....................ee.......hhhhhh.hhhhhhhhh..............................hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..............hhhhhhhhhhhhhhh..eee.............eee.hhhh..hhhhhh..hhhhhhhhhhhheee........hhhhhh.ee......eeehhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee............eee.hhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oek A   1 SWEVGCGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPsLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSAVDKLDLSPWASREN 595
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590     
                                                                                                                                                                                                                               198-SEP
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OEK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OEK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OEK)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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        A3F9D6_CAPHI | A3F9D6: 2e9e 2efb 2eha 2ojv 2r5l 3n8f 3nak 3niu 3qf1 3r55 3rke 3sxv 4ig5 4ljj 4msf 4n7a 4qjq 4qyq 5ff1 5hpw

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