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(-) Description

Title :  DEHYDROGENASE DOMAIN OF MYRICOCCUM THERMOPHILUM CELLOBIOSE DEHYDROGENASE WITH BOUND CELLOBIONOLACTAM, MTDH
 
Authors :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. C. Divne
Date :  30 May 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Fad/Nad(P)-Binding Domain, Cellobiose Oxidizing, Electron Transfer, Lignocellulose Degradation, Cdh Cytochrome Domain, Cellobiose, Cellobionolactam, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. Hallberg, C. Divne
Fungal Enzyme
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELLOBIOSE DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZ B
    Expression System Strain: X33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: CDH
    Organism Scientific: MYRIOCOCCUM THERMOPHILUM
    Organism Taxid: 455373
    Strain: CBS 208.89

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ABL1Ligand/Ion(2R,3R,4R,5R)-4,5-DIHYDROXY-2-(HYDROXYMETHYL)-6-OXOPIPERIDIN-3-YL BETA-D-GLUCOPYRANOSIDE
2CD2Ligand/IonCADMIUM ION
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:236 , GLY A:238 , ALA A:239 , GLY A:240 , GLU A:259 , LYS A:260 , GLY A:311 , CYS A:312 , VAL A:313 , GLY A:316 , GLY A:317 , VAL A:320 , ASN A:321 , ALA A:322 , GLY A:323 , LEU A:324 , THR A:438 , SER A:439 , VAL A:440 , SER A:479 , ALA A:480 , GLY A:481 , ASN A:700 , HIS A:701 , ASP A:737 , ALA A:738 , ASN A:748 , PRO A:749 , THR A:750 , ILE A:753 , ABL A:902 , HOH A:1025 , HOH A:1032 , HOH A:1056 , HOH A:1076 , HOH A:1105 , HOH A:1124 , HOH A:1131 , HOH A:1178BINDING SITE FOR RESIDUE FAD A 901
2AC2SOFTWAREASN A:292 , TRP A:295 , ALA A:322 , PRO A:576 , ILE A:578 , THR A:599 , ARG A:601 , GLU A:603 , TYR A:619 , SER A:699 , ASN A:700 , HIS A:701 , ASN A:748 , FAD A:901 , HOH A:1010 , HOH A:1125 , HOH A:1143 , HOH A:1164BINDING SITE FOR RESIDUE ABL A 902
3AC3SOFTWAREASN A:400 , GLU A:585 , NAG A:904BINDING SITE FOR RESIDUE NAG A 903
4AC4SOFTWARENAG A:903BINDING SITE FOR RESIDUE NAG A 904
5AC5SOFTWAREASN A:437 , ARG A:459 , ASP A:460 , GLY A:461 , NAG A:906BINDING SITE FOR RESIDUE NAG A 905
6AC6SOFTWARETHR A:271 , NAG A:905BINDING SITE FOR RESIDUE NAG A 906
7AC7SOFTWAREASP A:339BINDING SITE FOR RESIDUE CD A 907
8AC8SOFTWAREGLU A:456 , ASP A:554BINDING SITE FOR RESIDUE CD A 908

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:303 -A:312
2A:779 -A:796
3A:790 -A:806

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:575 -Pro A:576
2Phe A:676 -Pro A:677

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QI5)

(-) Exons   (0, 0)

(no "Exon" information available for 4QI5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:585
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhh...eeee......hhhhh....hhhhh........hhhhhhhhhhh..................hhhhhh.......hhhhhhhhh....hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh..ee............eeee..........hhhhhhhhhhhhh...eeee..eeeeeeeee..eeeeeeeee.......eeee......eeee.hhhhhhhhhhhhh...hhhhhhhhhhh.........................eeeeeeee.........hhhhhh.hhhhhhhhhhhh.hhhhh...eeeeeeeeeee.....eeeeeeeeee..........eeeeeeee........eeee.....eeeee.....hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhh..hhhhhh.............hhhhh................eee.hhhhh.......hhhhhhhhhhhhhhhhhh...........eee..............eeee.....eeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qi5 A 223 PVPTGVSFDYIVVGGGAGGIPAADKLSEAGKSVLLIEKGFASTANTGGTLGPEWLEGHDLTRFDVPGLCNQIWVDSKGIACEDTDQMAGCVLGGGTAVNAGLWFKPYSLDWDYLFPDGWKYNDVQPAINRALSRIPGTDAPSTDGKRYYQEGFEVLSKGLAAGGWTSVTANNAPDKKNRTFAHAPFMFAGGERNGPLGTYFQTAKKRNNFDVWLNTSVKRVIREGGHITGVEVEPFRDGGYEGIVPVTKVTGRVILSAGTFGSAKILLRSGIGPEDQLEVVAASEKDGPTMIGNSSWINLPVGYNLDDHLNTDTVISHPDVVFYDFYEAWDDPIESDKNSYLESRTGILAQAAPNIGPMFWEEIVGADGIVRQLQWTARVEGSLGAPNGHTMTMSQYLGRGATSRGRMTITPSLTTIVSDVPYLKDPNDKEAVIQGIINLQNALQNVANLTWLFPNSTITPREYVESMVVSPSNRRSNHWMGTNKLGTDDGRKGGSAVVDLDTRVYGTDNLFVIDASIFPGVPTTNPTSYIVVAAEHASSRILALPDLEPVPKYGQCGGREWTGSFVCADGSTCEYQNEWYSQCL 807
                                   232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QI5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QI5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QI5)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:575 - Pro A:576   [ RasMol ]  
    Phe A:676 - Pro A:677   [ RasMol ]  
 

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  4qi5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A9XK88_9PEZI | A9XK88: 4qi3 4qi4 4qi6

(-) Related Entries Specified in the PDB File

4qi3 4qi4 4qi6 4qi7 4qi8