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(-) Description

Title :  CELLOBIOSE DEHYDROGENASE FROM MYRICOCCUM THERMOPHILUM, MTCDH
 
Authors :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. C. Divne
Date :  30 May 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Immunoglobulin-Like Beta-Sandwich (Cytochrome), Fad/Nad(P)-Binding Domain (Dehydrogenase Domain), Cellobiose Oxidizing, Electron Transfer, Lignocellulose Degradation, Cellobiose, Lpmo, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. Hallberg, C. Divne
Fungal Enzyme
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELLOBIOSE DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAB
    Expression System Strain: X33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: CDH
    Organism Scientific: MYRIOCOCCUM THERMOPHILUM
    Organism Taxid: 455373
    Strain: CBS 208.89

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN5Ligand/IonALPHA-D-MANNOSE
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:67 , ILE A:68 , MET A:74 , LEU A:79 , ILE A:80 , TYR A:99 , MET A:101 , TRP A:155 , VAL A:156 , LEU A:173 , GLN A:174 , GLN A:175 , HIS A:176 , TRP A:295 , SER A:298 , SER A:695 , ARG A:698BINDING SITE FOR RESIDUE HEM A 901
02AC2SOFTWAREGLY A:236 , GLY A:238 , ALA A:239 , GLY A:240 , GLU A:259 , LYS A:260 , CYS A:312 , VAL A:313 , GLY A:316 , GLY A:317 , ASN A:321 , ALA A:322 , GLY A:323 , LEU A:324 , VAL A:440 , ALA A:480 , GLY A:481 , HIS A:701 , ASP A:737 , ALA A:738 , ASN A:748 , PRO A:749 , THR A:750 , ILE A:753BINDING SITE FOR RESIDUE FAD A 902
03AC3SOFTWAREASN A:400 , ARG A:401 , GLU A:585BINDING SITE FOR RESIDUE NAG A 903
04AC4SOFTWAREASN A:437 , ARG A:459 , ASP A:460 , GLY A:461BINDING SITE FOR RESIDUE NAG A 904
05AC5SOFTWAREGLU A:497 , ASN A:516 , TRP A:519 , ASN A:521 , GLU A:653BINDING SITE FOR RESIDUE NAG A 905
06AC6SOFTWAREASN A:678BINDING SITE FOR RESIDUE NAG A 906
07AC7SOFTWARESER A:195 , ASP A:198BINDING SITE FOR RESIDUE MAN A 907
08AC8SOFTWARETHR A:197 , ASP A:198BINDING SITE FOR RESIDUE MAN A 908
09AC9SOFTWARETHR A:204 , LYS A:205BINDING SITE FOR RESIDUE MAN A 909
10BC1SOFTWAREGLU A:110 , THR A:206BINDING SITE FOR RESIDUE MAN A 910
11BC2SOFTWARETHR A:226BINDING SITE FOR RESIDUE MAN A 911

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:57 -A:66
2A:129 -A:132
3A:303 -A:312
4A:779 -A:796
5A:790 -A:806

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:575 -Pro A:576
2Phe A:676 -Pro A:677

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QI6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QI6)

(-) Exons   (0, 0)

(no "Exon" information available for 4QI6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:800
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....eeeeeeee..........eeeeee............eeeeeeee......eeeee........eeeeeeee..eeee..ee.......ee.....eeeeeeeee...eeeeeeeee...eeee..eeee......eeeeeeeee...................eeeeeeeee........hhhhhhh.......................eeee....hhhhhhhhhhhh...eeee......hhhhh....hhhhh........hhhhhhhhhhh..................hhhhhh.......hhhhhhhhh....hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh...ee............eee...........hhhhhhhhhhhhh...eeee..eeeeeeeee..eeeeeeeee.......eeee......eeee..hhhhhhhhhhhh...hhhhhhhhhh.........hhhhh............eeeeeeee................hhhhhhhhhhhh.hhhhh....eeeeeeeeee.....eeeeeeeee...........eeeeeeee........eeee.....eeeee.....hhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhh...hhhhhh.............hhhhh................eee.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eee..............eeeeee..eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qi6 A   1 xNNVPNTFTDPDSGITFNTWGLDEDSPQTQGGFTFGVALPSDALTTDASEFIGYLKCARNDESGWCGISLGGPMTNSLLITAWPHEDTVYTSLRFATGYAMPDVYEGDAEITQVSSSVNSTHFSLIFRCKNCLQWSHGGSSGGASTSGGVLVLGWVQAFDDPGNPTCPEQITLQQHDNGMGIWGAQLNTDAASPSYTDWAAQATKTVTGDSVVGVPVPTGVSFDYIVVGGGAGGIPAADKLSEAGKSVLLIEKGFASTANTGGTLGPEWLEGHDLTRFDVPGLCNQIWVDSKGIACEDTDQMAGCVLGGGTAVNAGLWFKPYSLDWDYLFPDGWKYNDVQPAINRALSRIPGTDAPSTDGKRYYQEGFEVLSKGLAAGGWTSVTANNAPDKKNRTFAHAPFMFAGGERNGPLGTYFQTAKKRNNFDVWLNTSVKRVIREGGHITGVEVEPFRDGGYEGIVPVTKVTGRVILSAGTFGSAKILLRSGIGPEDQLEVVAASEKDGPTMIGNSSWINLPVGYNLDDHLNTDTVISHPDVVFYDFYEAWDDPIESDKNSYLESRTGILAQAAPNIGPMFWEEIVGADGIVRQLQWTARVEGSLGAPNGHTMTMSQYLGRGATSRGRMTITPSLTTIVSDVPYLKDPNDKEAVIQGIINLQNALQNVANLTWLFPNSTITPREYVESMVVSPSNRRSNHWMGTNKLGTDDGRKGGSAVVDLDTRVYGTDNLFVIDASIFPGVPTTNPTSYIVVAAEHASSRILALPDLEPVPKYGQCGGREWTGSFVCADGSTCEYQNEWYSQCL 807
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210|      227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807
                            |                                                                                                                                                                                                              210|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                            1-PCA                                                                                                                                                                                                           218
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QI6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QI6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QI6)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:575 - Pro A:576   [ RasMol ]  
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        A9XK88_9PEZI | A9XK88: 4qi3 4qi4 4qi5

(-) Related Entries Specified in the PDB File

4qi3 4qi4 4qi5 4qi7 4qi8