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(-) Description

Title :  CELLOBIOSE DEHYDROGENASE FROM NEUROSPORA CRASSA, NCCDH
 
Authors :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. C. Divne
Date :  30 May 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Immunoglobulin-Like Beta-Sandwich (Cytochrome), Fad/Nad(P)-Binding Domain (Dehydrogenase Domain), Cellobiose Oxidizing, Electron Transfer, Lignocellulose Degradation, Cellobiose, Lpmo, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. Hallberg, C. Divne
Fungal Enzyme
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELLOBIOSE DEHYDROGENASE
    Chains: A, B
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAA
    Expression System Strain: X33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: CELLOBIOSE DEHYDROGENASE
    Gene: CDH-1, NCU00206
    Organism Scientific: NEUROSPORA CRASSA
    Organism Taxid: 367110
    Strain: OR74A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 45)

Asymmetric Unit (6, 45)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN4Ligand/IonALPHA-D-MANNOSE
4MG4Ligand/IonMAGNESIUM ION
5NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PT20Ligand/IonPLATINUM (II) ION
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN2Ligand/IonALPHA-D-MANNOSE
4MG-1Ligand/IonMAGNESIUM ION
5NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PT-1Ligand/IonPLATINUM (II) ION
Biological Unit 2 (4, 10)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN2Ligand/IonALPHA-D-MANNOSE
4MG-1Ligand/IonMAGNESIUM ION
5NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PT-1Ligand/IonPLATINUM (II) ION
Biological Unit 3 (4, 21)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3MAN4Ligand/IonALPHA-D-MANNOSE
4MG-1Ligand/IonMAGNESIUM ION
5NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PT-1Ligand/IonPLATINUM (II) ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:67 , ALA A:73 , MET A:74 , LEU A:79 , TYR A:99 , MET A:101 , PRO A:102 , TRP A:155 , VAL A:156 , LEU A:173 , SER A:174 , GLN A:175 , HIS A:176 , GLY A:348 , ARG A:352BINDING SITE FOR RESIDUE HEM A 901
02AC2SOFTWAREVAL A:235 , GLY A:236 , GLY A:237 , ALA A:239 , GLY A:240 , GLU A:259 , LYS A:260 , TRP A:295 , MET A:309 , GLY A:311 , CYS A:312 , VAL A:313 , GLY A:316 , GLY A:317 , ASN A:321 , ALA A:322 , LEU A:324 , ALA A:439 , VAL A:440 , ALA A:480 , GLY A:481 , ASN A:699 , HIS A:700 , ASP A:736 , ALA A:737 , ASN A:747 , PRO A:748 , THR A:749 , ILE A:752 , MG A:924BINDING SITE FOR RESIDUE FAD A 902
03AC3SOFTWAREASN A:119 , THR A:121 , HIS A:122 , THR A:124BINDING SITE FOR RESIDUE NAG A 903
04AC4SOFTWAREASN A:278 , GLY B:461 , MAN B:909BINDING SITE FOR RESIDUE NAG A 904
05AC5SOFTWAREASN A:400BINDING SITE FOR RESIDUE NAG A 905
06AC6SOFTWAREASN A:471 , THR A:472 , ALA A:791BINDING SITE FOR RESIDUE NAG A 906
07AC7SOFTWARELYS A:497 , LYS A:504 , ASN A:515BINDING SITE FOR RESIDUE NAG A 907
08AC8SOFTWAREASN A:541 , LYS A:669BINDING SITE FOR RESIDUE NAG A 908
09AC9SOFTWAREASN A:555 , THR A:557 , ASP A:558BINDING SITE FOR RESIDUE NAG A 909
10BC1SOFTWARETHR A:222 , GLU B:275 , NAG B:904BINDING SITE FOR RESIDUE MAN A 910
11BC2SOFTWARETHR A:226BINDING SITE FOR RESIDUE MAN A 911
12BC3SOFTWARELYS A:331BINDING SITE FOR RESIDUE PT A 916
13BC4SOFTWARELYS A:273BINDING SITE FOR RESIDUE PT A 917
14BC5SOFTWARELYS A:433BINDING SITE FOR RESIDUE PT A 919
15BC6SOFTWAREFAD A:902BINDING SITE FOR RESIDUE MG A 924
16BC7SOFTWAREASP A:177BINDING SITE FOR RESIDUE MG A 926
17BC8SOFTWAREGLY B:67 , ALA B:73 , MET B:74 , LEU B:79 , THR B:81 , TYR B:99 , MET B:101 , TRP B:155 , VAL B:156 , LEU B:173 , SER B:174 , GLN B:175 , HIS B:176 , GLN B:182BINDING SITE FOR RESIDUE HEM B 901
18BC9SOFTWAREGLY B:236 , GLY B:238 , ALA B:239 , GLY B:240 , ILE B:258 , GLU B:259 , LYS B:260 , TRP B:295 , MET B:309 , GLY B:311 , CYS B:312 , VAL B:313 , GLY B:316 , GLY B:317 , ASN B:321 , ALA B:322 , LEU B:324 , ALA B:439 , VAL B:440 , ALA B:480 , GLY B:481 , ASN B:699 , ASP B:736 , ALA B:737 , ASN B:747 , PRO B:748 , THR B:749 , ILE B:752BINDING SITE FOR RESIDUE FAD B 902
19CC1SOFTWAREASN B:119 , HIS B:122 , THR B:124 , SER B:355BINDING SITE FOR RESIDUE NAG B 903
20CC2SOFTWAREGLY A:461 , MAN A:910 , ASN B:278BINDING SITE FOR RESIDUE NAG B 904
21CC3SOFTWAREASN B:400 , ARG B:401BINDING SITE FOR RESIDUE NAG B 905
22CC4SOFTWARELYS B:497 , LYS B:504 , ASN B:515BINDING SITE FOR RESIDUE NAG B 906
23CC5SOFTWAREASN B:541BINDING SITE FOR RESIDUE NAG B 907
24CC6SOFTWAREASN B:555 , THR B:557BINDING SITE FOR RESIDUE NAG B 908
25CC7SOFTWARENAG A:904 , THR B:222 , ASN B:460 , GLY B:461 , TYR B:463BINDING SITE FOR RESIDUE MAN B 909
26CC8SOFTWARETHR B:226BINDING SITE FOR RESIDUE MAN B 910
27CC9SOFTWARELYS B:273BINDING SITE FOR RESIDUE PT B 915
28DC1SOFTWARELYS B:433BINDING SITE FOR RESIDUE PT B 917
29DC2SOFTWARETHR B:634BINDING SITE FOR RESIDUE MG B 919

(-) SS Bonds  (11, 11)

Asymmetric Unit
No.Residues
1A:54 -A:66
2A:129 -A:132
3A:167 -A:211
4A:303 -A:312
5A:778 -A:795
6A:789 -A:805
7B:54 -B:66
8B:129 -B:132
9B:303 -B:312
10B:778 -B:795
11B:789 -B:805

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Asn A:148 -Lys A:149
2Ala A:574 -Pro A:575
3Tyr A:675 -Pro A:676
4Ala A:791 -Pro A:792
5Ala B:61 -Asn B:62
6Ala B:574 -Pro B:575
7Gly B:578 -Pro B:579
8Tyr B:675 -Pro B:676
9Ala B:791 -Pro B:792

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QI7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QI7)

(-) Exons   (0, 0)

(no "Exon" information available for 4QI7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:805
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeeeee........eeeeee............eeeeeeee.........eeeee........eeeeeeee..eeeeeeee.......ee.....eeeeeeeee...eeeeeeeee...eeee..eeee.........eeeeee........hhhhh.......eeeee....hhhhh..hhhhhhhhh..................ee........eeee....hhhhhhhhhhh....eeee...............hhhhh........hhhhhhhhhh...................hhhhhh.......hhhhhhhhh........hhhhhhhhhhhh..............hhhhhhhhhhhhh...ee............eee...........hhhhhhhhhhhhh...eeee..eeeeeeeee..eeeeeeeee.....eeeeee......eeee..hhhhhhhhhhhh...hhhhhhhhhh..hhhhh............eee...eeeeeeee................hhhhhhhhhhhh.hhhhh....eeeeeeeeee.....eeeeeeeee...........eeeeeeee.......eeeee.....eeeee.....hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhh..hhhhhh.............hhhhh................eee.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eee...............eee.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qi7 A   2 TAPKTFTHPDTGIVFNTWSASDSQTKGGFTVGMALPSNALTTDATEFIGYLECSSAKNGANSGWCGVSLRGAMTNNLLITAWPSDGEVYTNLMFATGYAMPKNYAGDAKITQIASSVNATHFTLVFRCQNCLSWDQDGVTGGISTSNKGAQLGWVQAFPSPGNPTCPTQITLSQHDNGMGQWGAAFDSNIANPSYTAWAAKATKTVTGTCSGPVTTSIAATPVPTGVSFDYIVVGGGAGGIPVADKLSESGKSVLLIEKGFASTGEHGGTLKPEWLNNTSLTRFDVPGLCNQIWKDSDGIACSDTDQMAGCVLGGGTAINAGLWYKPYTKDWDYLFPSGWKGSDIAGATSRALSRIPGTTTPSQDGKRYLQQGFEVLANGLKASGWKEVDSLKDSEQKNRTFSHTSYMYINGERGGPLATYLVSAKKRSNFKLWLNTAVKRVIREGGHITGVEVEAFRNGGYSGIIPVTNTTGRVVLSAGTFGSAKILLRSGIGPKDQLEVVKASADGPTMVSNSSWIDLPVGHNLVDHTNTDTVIQHNNVTFYDFYKAWDNPNTTDMNLYLNGRSGIFAQAAPNIGPLFWEEITGADGIVRQLHWTARVEGSFETPDGYAMTMSQYLGRGATSRGRMTLSPTLNTVVSDLPYLKDPNDKAAVVQGIVNLQKALANVKGLTWAYPSANQTAADFVDKQPVTYQSRRSNHWMGTNKMGTDDGRSGGTAVVDTNTRVYGTDNLYVVDASIFPGVPTTNPTAYIVVAAEHAAAKILAQPANEAVPKWGWCGGPTYTGSQTCQAPYKCEKQNDWYWQCV 806
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801     


Chain B from PDB  Type:PROTEIN  Length:792
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......eeeeee.........eeeeee.hhhhhh....eeeeeeeee.hhhh....eeeee........eeeeeeee..eeeeeeee.......ee.....eeeeeeeee...eeeeeeeee...................eeeeeeeee....................eeeeeeee........hhhhhh........ee........eeee....hhhhhhhhhhhh...eeee......hhhhh....hhhhh........hhhhhhhhhh...................hhhhhh.......hhhhhhhhh........hhhhhhhhhhhh..............hhhhhhhhhhhhhh..ee............eee...........hhhhhhhhhhhhhh..eeee..eeeeeeeee..eeeeeeeee.....eeeeee......eeee.hhhhhhhhhhhhh...hhhhhhhhhhh.......hhhhh............eeeeeeee................hhhhhhhhhhhh.hhhhh....eeeeeeeeee.....eeeeeeeee............eeeeeee........eeee.....eeeee.....hhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhh..hhhhhh.............hhhhh................eee.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eee..............eeee.....eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qi7 B   2 TAPKTFTHPDTGIVFNTWSASDSQTKGGFTVGMALPSNALTTDATEFIGYLECSSAKNGANSGWCGVSLRGAMTNNLLITAWPSDGEVYTNLMFATGYAMPKNYAGDAKITQIASSVNATHFTLVFRCQNCLSWDQDGVTGGISTSNKGAQLGWVQAFPSPGNPTCPTQITLSQHDNGMGQWGAAFDSNIANPSYTAWAAKATKIAATPVPTGVSFDYIVVGGGAGGIPVADKLSESGKSVLLIEKGFASTGEHGGTLKPEWLNNTSLTRFDVPGLCNQIWKDSDGIACSDTDQMAGCVLGGGTAINAGLWYKPYTKDWDYLFPSGWKGSDIAGATSRALSRIPGTTTPSQDGKRYLQQGFEVLANGLKASGWKEVDSLKDSEQKNRTFSHTSYMYINGERGGPLATYLVSAKKRSNFKLWLNTAVKRVIREGGHITGVEVEAFRNGGYSGIIPVTNTTGRVVLSAGTFGSAKILLRSGIGPKDQLEVVKASADGPTMVSNSSWIDLPVGHNLVDHTNTDTVIQHNNVTFYDFYKAWDNPNTTDMNLYLNGRSGIFAQAAPNIGPLFWEEITGADGIVRQLHWTARVEGSFETPDGYAMTMSQYLGRGATSRGRMTLSPTLNTVVSDLPYLKDPNDKAAVVQGIVNLQKALANVKGLTWAYPSANQTAADFVDKQPVTYQSRRSNHWMGTNKMGTDDGRSGGTAVVDTNTRVYGTDNLYVVDASIFPGVPTTNPTAYIVVAAEHAAAKILAQPANEAVPKWGWCGGPTYTGSQTCQAPYKCEKQNDWYWQCV 806
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   ||  224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804  
                                                                                                                                                                                                                                     205|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                      219
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QI7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QI7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QI7)

(-) Gene Ontology  (9, 9)

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    Ala B:61 - Asn B:62   [ RasMol ]  
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 Related Entries

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(-) Related Entries Specified in the PDB File

4qi3 4qi4 4qi5 4qi6 4qi8