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(-) Description

Title :  DEHYDROGENASE DOMAIN OF MYRICOCCUM THERMOPHILUM CELLOBIOSE DEHYDROGENASE, MTDH
 
Authors :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. C. Divne
Date :  30 May 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Fad/Nad(P)-Binding Domain, Cellobiose Oxidizing, Electron Transfer, Lignocellulose Degradation, Cdh Cytochrome Domain, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. C. Tan, R. Gandini, C. Sygmund, R. Kittl, D. Haltrich, R. Ludwig, B. M. Hallberg, C. Divne
Fungal Enzyme
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELLOBIOSE DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZ B
    Expression System Strain: X33
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Gene: CDH
    Organism Scientific: MYRIOCOCCUM THERMOPHILUM
    Organism Taxid: 455373
    Strain: CBS 208.89

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1CD9Ligand/IonCADMIUM ION
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 18)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2FAD3Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3NAG15Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:236 , GLY A:237 , GLY A:238 , ALA A:239 , GLY A:240 , ILE A:258 , GLU A:259 , LYS A:260 , GLY A:311 , CYS A:312 , VAL A:313 , GLY A:316 , GLY A:317 , ASN A:321 , ALA A:322 , GLY A:323 , LEU A:324 , THR A:438 , VAL A:440 , ALA A:480 , GLY A:481 , ASN A:700 , HIS A:701 , ASP A:737 , ALA A:738 , ASN A:748 , PRO A:749 , THR A:750 , ILE A:753BINDING SITE FOR RESIDUE FAD A 901
02AC2SOFTWAREASN A:400 , GLU A:585 , NAG A:903BINDING SITE FOR RESIDUE NAG A 902
03AC3SOFTWARENAG A:902BINDING SITE FOR RESIDUE NAG A 903
04AC4SOFTWAREASN A:437 , ASP A:460 , GLY A:461 , NAG A:905BINDING SITE FOR RESIDUE NAG A 904
05AC5SOFTWARETHR A:271 , NAG A:904BINDING SITE FOR RESIDUE NAG A 905
06AC6SOFTWAREGLU A:501 , ASN A:516BINDING SITE FOR RESIDUE NAG A 906
07AC7SOFTWAREASP A:339BINDING SITE FOR RESIDUE CD A 907
08AC8SOFTWARELYS A:441 , GLU A:456 , LYS A:508 , ASP A:554BINDING SITE FOR RESIDUE CD A 908
09AC9SOFTWARECYS A:291 , ASN A:292BINDING SITE FOR RESIDUE CD A 909
10BC1SOFTWAREHIS A:405BINDING SITE FOR RESIDUE CD A 910
11BC2SOFTWAREGLU A:783BINDING SITE FOR RESIDUE CD A 911
12BC3SOFTWARELYS A:299 , GLU A:304BINDING SITE FOR RESIDUE CD A 912
13BC4SOFTWARELYS A:715BINDING SITE FOR RESIDUE CD A 913
14BC5SOFTWAREGLU A:278 , GLU A:507BINDING SITE FOR RESIDUE CD A 914
15BC6SOFTWAREGLU A:464 , GLU A:550BINDING SITE FOR RESIDUE CD A 915

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:303 -A:312
2A:779 -A:796
3A:790 -A:806

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:575 -Pro A:576
2Phe A:676 -Pro A:677

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QI4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QI4)

(-) Exons   (0, 0)

(no "Exon" information available for 4QI4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:585
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhh....eeee......hhhhh....hhhhh........hhhhhhhhhhh..................hhhhhh.......hhhhhhhhh....hhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh..ee............eee...........hhhhhhhhhhhhh...eeee..eeeeeeeee..eeeeeeeee.......eeee......eeee....hhhhhhhhh....hhhhhhhhhhh........hhhhh............eeeeeeee.........hhhhhh.hhhhhhh......hhhhh....eeeeeeeeee.....eeeeeeeee...........eeeeeeee........eeee.....eeeee.....hhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhh...hhhhhh.............hhhhh................eee.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eee..............eeeeee..eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qi4 A 223 PVPTGVSFDYIVVGGGAGGIPAADKLSEAGKSVLLIEKGFASTANTGGTLGPEWLEGHDLTRFDVPGLCNQIWVDSKGIACEDTDQMAGCVLGGGTAVNAGLWFKPYSLDWDYLFPDGWKYNDVQPAINRALSRIPGTDAPSTDGKRYYQEGFEVLSKGLAAGGWTSVTANNAPDKKNRTFAHAPFMFAGGERNGPLGTYFQTAKKRNNFDVWLNTSVKRVIREGGHITGVEVEPFRDGGYEGIVPVTKVTGRVILSAGTFGSAKILLRSGIGPEDQLEVVAASEKDGPTMIGNSSWINLPVGYNLDDHLNTDTVISHPDVVFYDFYEAWDDPIESDKNSYLESRTGILAQAAPNIGPMFWEEIVGADGIVRQLQWTARVEGSLGAPNGHTMTMSQYLGRGATSRGRMTITPSLTTIVSDVPYLKDPNDKEAVIQGIINLQNALQNVANLTWLFPNSTITPREYVESMVVSPSNRRSNHWMGTNKLGTDDGRKGGSAVVDLDTRVYGTDNLFVIDASIFPGVPTTNPTSYIVVAAEHASSRILALPDLEPVPKYGQCGGREWTGSFVCADGSTCEYQNEWYSQCL 807
                                   232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QI4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QI4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QI4)

(-) Gene Ontology  (8, 8)

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 Related Entries

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        A9XK88_9PEZI | A9XK88: 4qi3 4qi5 4qi6

(-) Related Entries Specified in the PDB File

4qi3 4qi5 4qi6 4qi7 4qi8