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(-) Description

Title :  MOLECULAR BASIS FOR DISRUPTION OF E-CADHERIN ADHESION BY BOTULINUM NEUROTOXIN A COMPLEX
 
Authors :  K. Lee, X. Zhong, S. Gu, A. Kruel, M. B. Dorner, K. Perry, A. Rummel, M. Don
Date :  13 May 14  (Deposition) - 25 Jun 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Oral Toxicity, Botulinum Neurotoxin, E-Cadherin, Ha70, Ha17, Ha33, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Lee, X. Zhong, S. Gu, A. M. Kruel, M. B. Dorner, K. Perry, A. Rummel, M. Dong, R. Jin
Molecular Basis For Disruption Of E-Cadherin Adhesion By Botulinum Neurotoxin A Complex.
Science V. 344 1405 2014
PubMed-ID: 24948737  |  Reference-DOI: 10.1126/SCIENCE.1253823

(-) Compounds

Molecule 1 - HEMAGGLUTININ COMPONENT HA33
    Chains: D, C, I, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HA70, CBO0801, CLC_0857
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 441771
    Strain: HALL / ATCC 3502 / NCTC 13319 / TYPE A
    Synonym: HEMAGGLUTININ COMPONENT OF THE NEUROTOXIN COMPLEX
 
Molecule 2 - HEMAGGLUTININ COMPONENT HA17
    Chains: B, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HA17, CBO0802, CLC_0858
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 441771
    Strain: HALL / ATCC 3502 / NCTC 13319 / TYPE A
    Synonym: HEMAGGLUTININ COMPONENT OF THE NEUROTOXIN COMPLEX
 
Molecule 3 - HEMAGGLUTININ COMPONENT HA70
    Chains: A, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HA33, CBO0803, CLC_0859
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 441771
    Strain: HALL / ATCC 3502 / NCTC 13319 / TYPE A
    Synonym: HEMAGGLUTININ COMPONENT OF THE NEUROTOXIN COMPLEX
 
Molecule 4 - CADHERIN-1
    Chains: E, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CDH1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ARC-1, EPITHELIAL CADHERIN, E-CADHERIN, UVOMORULIN, E- CAD/CTF1, E-CAD/CTF2, E-CAD/CTF3

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU E:11 , ASP E:67 , GLU E:69 , ASP E:103 , HOH E:417 , HOH E:430BINDING SITE FOR RESIDUE CA E 301
2AC2SOFTWAREGLU E:11 , GLU E:69 , ASP E:100 , GLN E:101 , ASP E:103 , ASP E:136BINDING SITE FOR RESIDUE CA E 302
3AC3SOFTWAREASN E:102 , ASN E:104 , ASP E:134 , ASP E:136 , ASN E:143 , ASP E:195BINDING SITE FOR RESIDUE CA E 303
4AC4SOFTWAREGLU J:11 , ASP J:67 , GLU J:69 , ASP J:103BINDING SITE FOR RESIDUE CA J 301
5AC5SOFTWAREGLU J:11 , GLU J:69 , ASP J:100 , GLN J:101 , ASP J:103 , ASN J:104 , ASP J:136BINDING SITE FOR RESIDUE CA J 302
6AC6SOFTWAREASN J:102 , ASN J:104 , ASP J:134 , ASP J:136 , ASN J:143 , ASP J:195BINDING SITE FOR RESIDUE CA J 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QD2)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Ala D:77 -Pro D:78
2Gly D:266 -Gly D:267
3Lys B:145 -Ile B:146
4Ala C:77 -Pro C:78
5Gly C:266 -Gly C:267
6Gln A:423 -Asn A:424
7Leu A:426 -Pro A:427
8Met A:508 -Asn A:509
9Phe E:17 -Pro E:18
10Pro E:46 -Pro E:47
11Asp E:154 -Pro E:155
12Leu E:157 -Pro E:158
13Ala I:77 -Pro I:78
14Gly I:266 -Gly I:267
15Lys G:145 -Ile G:146
16Ala H:77 -Pro H:78
17Gly H:266 -Gly H:267
18Gln F:423 -Asn F:424
19Leu F:426 -Pro F:427
20Met F:508 -Asn F:509
21Phe J:17 -Pro J:18
22Pro J:46 -Pro J:47
23Asp J:154 -Pro J:155
24Leu J:157 -Pro J:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QD2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QD2)

(-) Exons   (0, 0)

(no "Exon" information available for 4QD2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......eeeee....eeeee.....eeeeee........eeee....eeee........eeeeeee.....eeeee.........eeeeeee.hhhhhhh.eeeeee.........eeeee......eeeeeee.........eeeeeee....eeeeeeeeeeee..eeeeeeeeeeee......eeeee...eeeeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 A 380 ENIQEINTAISDNYTYNINNPFYILFTVNTTGIYKINAQNNLPSLKIYEAIGINYITGFDSPNAKSYLVVLLNKDKNYYIRVPQTSSNIENQIQFKREEGDLRNLMNSSVNIIDNLNSTGAHYYTRQSPDVHDYISYEFTIPGNFNNKDTSNIRLYTSYNQGIGTLFRVTETIDGYNLINIQQNLHLLNNTNSIRLLNGAIYILKVEVTELNNYNIRLHIDITN 626
                                   389       404       414       424       434 ||    462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622    
                                           397|                              436|                                                                                                                                                                           
                                            403                               455                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.....eeeeee..eeeeee...hhhh.eeeeee....eeeeee......eeee.....eeee..hhhh.eeeeeee..eeeeee........eeee.............eeee.....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 B   4 ERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI 146
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143   


Chain C from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee......eeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee.....eeeeee....eeeeee...hhhh.eeeeehhhhhhh.eeeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.hhhh..eeeee.....hhhh.eeeee......eeeeee.....eeeee..........eeeee...hhhh.eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 C   9 NSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      


Chain D from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee.....eeeeee..eeeeee...hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee......eeeee....eeeee....hhhh.eeeeehhhhhhh.eeeeeee.....eeeeeee..eeeeeeee.......eeeeeee....eeeeee.....eeeee.......eeeee..........eeeee.......eeeee.....eeeee..........eeeee........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 D   9 NSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      


Chain E from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee........eeeee...........eeeeee..........eee.....eeee..........eeeeeeeee..........eeeeeeee.......ee...eeeeeee.......eeee..ee.............eeeeeeee........eee.....eeee...........eeeeeeeeehhhhh..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 E   2 WVIPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211  


Chain F from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.......eeeee.....eeeee.....eeeeeee.......eeee....eeee........eeeeeee.....eeeee.........eeeeeee.hhhhhhh.eeeeee......eeeeeeee......eeeeeee.........eeeeeeee...eeeeeeeeeeee..eeeeeeeeeeee......eeeee...eeeeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 F 380 ENIQEINTAISDNYTYNINNNPFYILFTVNTTGIYKINAQNNLPSLKIYEAIGINYITGFDSPNAKSYLVVLLNKDKNYYIRVPQTSSNIENQIQFKREEGDLRNLMNSSVNIIDNLNSTGAHYYTRQSPDVHDYISYEFTIPGNFNNKDTSNIRLYTSYNQGIGTLFRVTETIDGYNLINIQQNLHLLNNTNSIRLLNGAIYILKVEVTELNNYNIRLHIDITN 626
                                   389       403       413       423       433  ||   461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621     
                                           397|                               436|                                                                                                                                                                           
                                            402                                455                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.....eeeeee..eeeeee...hhhh.eeeeee....eeeeee......eeee.....eeee..hhhh.eeeeeee..eeeeee........eeee.............eeee.....hhhh.eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 G   4 ERTFLPNGNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI 146
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143   


Chain H from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee......eeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee.....eeeee.....eeeeee....eeeeee...hhhh.eeeeehhhhhhh.eeeeeee.....eeeee.......eeeee........eeeeee....eeeeee.....eeeeeehhhh.eeeeee..........eeeee......eeeeee.....eeeee..........eeeee.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 H   9 NSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      


Chain I from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee......eeeee..eeeee....hhhh.eeeeee....eeeeee.......eeeee......eeeee...hhhh.eeeeee....eeeeee......eeeee....eeeee....hhhh.eeeeehhhhhhh.eeeeeee.....eeeee.......eeeee...hhhh.eeeeee....eeeeee.....eeeee.......eeeee.....hhhh.eeeee......eeeeee.....eeeee..........eeeee...hhh.eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 I   9 NSLNDKIVTISCKADTNLFFYQVAGNVSLFQQTRNYLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSNYIKFIIEDYIISDLNNFTCKISPILDLNKVVQQVDVTNLNVNLYTWDYGRNQKWTIRYNEEKAAYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQNNDAQYWLINPVSDTDETYTITNLRDTTKALDLYGGQTANGTAIQVFNYHGDDNQKWNIRNPP 294
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      


Chain J from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee........eeeee..hhhhhh...eeeeee..........eee.....eeee..........eeeeeeeee..........eeeeeeee.......ee...eeeeee........eeee..ee.............eeeeeeee........eee.....eeee...........eeeeeeeee.hhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qd2 J   2 WVIPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QD2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QD2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QD2)

(-) Gene Ontology  (80, 80)

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  Cis Peptide Bonds
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  4qd2
    Family and Domain Information: ProDom | SYSTERS
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  A5HZZ4_CLOBH | A5HZZ4
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  A5HZZ5_CLOBH | A5HZZ5
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  A5HZZ6_CLOBH | A5HZZ6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  CADH1_MOUSE | P09803
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
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  A5HZZ4_CLOBH | A5HZZ4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  A5HZZ5_CLOBH | A5HZZ5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  A5HZZ6_CLOBH | A5HZZ6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CADH1_MOUSE | P09803
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CADH1_MOUSE | P09803: 1edh 1ff5 1i7w 1i7x 1q1p 1suh 2omw 2qvf 3ifq 3lne 3lnf 3lng 3lnh 3lni 3q2l 3q2n 3q2v 3qrb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QD2)