4P59 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HER3 EXTRACELLULAR DOMAIN IN COMPLEX WITH FAB FRAGMENT OF MOR09825

Authors :   E. R. Sprague

Date :   15 Mar 14 (Deposition) - 16 Apr 14 (Release) - 25 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.40

Chains :   Asym./Biol. Unit : A,H,L

Keywords :   Her3 Receptor, Therapeutic Antibody, Fab Fragment, Anti-Her3, Signaling Protein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Garner, C. U. Bialucha, E. R. Sprague, J. T. Garrett, Q. Sheng, S. Li, O. Sineshchekova, P. Saxena, C. R. Sutton, D. Chen, Y. Chen, H. Wang, J. Liang, R. Das, R. Mosher, J. Gu, A. Huang, N. Haubst, C. Zehetmeier, M. Haberl, W. Elis, C. Kunz, A. B. Heidt, K. Herlihy, J. Murtie, A. Schuller, C. L. Arteaga, W. R. Sellers, S. A. Ettenberg
An Antibody That Locks Her3 In The Inactive Conformation Inhibits Tumor Growth Driven By Her2 Or Neuregulin.
Cancer Res. V. 73 6024 2013
PubMed-ID: 23928993 | Reference-DOI: 10.1158/0008-5472.CAN-13-1198

Molecule 1 - RECEPTOR TYROSINE-PROTEIN KINASE ERBB-3
	Chains	:	A
	EC Number	:	2.7.10.1
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK293
	Expression System Taxid	:	9606
	Gene	:	ERBB3, HER3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PROTO-ONCOGENE-LIKE PROTEIN C-ERBB-3,TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER3

Molecule 2 - MOR09825 FAB FRAGMENT HEAVY CHAIN
	Chains	:	H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 3 - MOR09825 FAB FRAGMENT LIGHT CHAIN
	Chains	:	L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3
Asymmetric/Biological Unit	:	A	H	L

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 7)

No.	Name	Count	Type	Full Name
1	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:57 , ARG A:81 , ARG A:103 , CYS A:243 , PHE A:244 , ALA A:245 , CYS A:246 , ASN A:250 , GLY A:253	binding site for Poly-Saccharide residues NAG A 703 through NAG A 704 bound to ASN A 250
2	AC2	SOFTWARE	ASN A:353	binding site for Poly-Saccharide residues NAG A 705 through NAG A 706 bound to ASN A 353
3	AC3	SOFTWARE	HIS A:405 , MET A:406 , HIS A:407 , ASN A:408 , SER A:440 , PRO A:512	binding site for Mono-Saccharide NAG A 701 bound to ASN A 408
4	AC4	SOFTWARE	ARG A:388 , ASN A:414	binding site for Mono-Saccharide NAG A 707 bound to ASN A 414
5	AC5	SOFTWARE	PRO A:404 , LEU A:436 , ASN A:437 , GLN A:461 , SER L:76	binding site for Mono-Saccharide NAG A 702 bound to ASN A 437

Asymmetric/Biological Unit

No.	Residues
1	A:29	-	A:56
2	A:156	-	A:183
3	A:186	-	A:194
4	A:190	-	A:202
5	A:210	-	A:218
6	A:214	-	A:226
7	A:227	-	A:235
8	A:231	-	A:243
9	A:246	-	A:255
10	A:259	-	A:286
11	A:290	-	A:301
12	A:305	-	A:320
13	A:323	-	A:327
14	A:331	-	A:354
15	A:463	-	A:493
16	A:500	-	A:509
17	A:504	-	A:517
18	A:520	-	A:529
19	A:533	-	A:549
20	A:552	-	A:565
21	A:556	-	A:573
22	A:576	-	A:585
23	A:589	-	A:610
24	A:613	-	A:621
25	A:617	-	A:629
26	H:22	-	H:96
27	H:144	-	H:200
28	L:23	-	L:88
29	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Pro H:41	-	Gly H:42
2	Pro H:130	-	Ser H:131
3	Phe H:150	-	Pro H:151
4	Glu H:152	-	Pro H:153
5	Ser L:7	-	Pro L:8
6	Phe L:94	-	Pro L:95
7	Tyr L:140	-	Pro L:141

(no "SAP(SNP)/Variant" information available for 4P59)

(no "PROSITE Motif" information available for 4P59)

(no "Exon" information available for 4P59)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:592
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............eee..eeee........hhhhhh.ee...eeee.....ee......ee....hhhh.eeeeee............ee......ee...eeee............hhhhh.......ee.........................................................................eee..eee......eeee....eeee.....eee..eee.......eee..eee......eeeeee..eeeeee.......ee...............hhhhhh...ee...eeehhhhhh..........hhhhhhhhh...ee...eee.........hhhhhh..ee...........eeee..............ee....eeee...........hhhhhh.......eeee...hhhhhhhhh.........................ee....ee...........eee....eee...........................eee..eee....eeeee..eeeeeee.....eee................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p59 A  26 QAVCPGTLNGYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLG 631
                                    35|       59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629  
                                    35|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                     50

Chain H from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...ee....eeeeeeeee..hhhhh.eeeeee......eeeeee......eee.......eeeeee....eeeeeee..hhhhheeeeeeee....eeee...eeeee........eeeee.....eeeeeeeeee....eeeee.hhh....eee...ee.....eeeeeeeeehhhhhh...eeeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p59 H   2 VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAINSQGKSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARWGDEGFDIWGQGTLVTVSSASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131||     147       157       167       177       187       197       207       217
                                                                                                                                                            132|                                                                              
                                                                                                                                                             139

Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh..eeeeeeeeee....eeeeeee..ee....ee............eeeeeeeeehhhhhhh..eeeeeeee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p59 L   1 DIQMTQSPSSLSASVGDRVTITCRASQGISNWLAWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAVYYCQQYSSFPTTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4P59)

(no "CATH Domain" information available for 4P59)

(no "Pfam Domain" information available for 4P59)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu H:152 - Pro H:153	[ RasMol ]
		Phe H:150 - Pro H:151	[ RasMol ]
		Phe L:94 - Pro L:95	[ RasMol ]
		Pro H:130 - Ser H:131	[ RasMol ]
		Pro H:41 - Gly H:42	[ RasMol ]
		Ser L:7 - Pro L:8	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]

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	4p59
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	ERBB3_HUMAN \| P21860
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	2.7.10.1
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	ERBB3_HUMAN \| P21860	:	1m6b 2l9u 3kex 3lmg 3p11 4leo 4otw 4riw 4rix 4riy 5cus

(no "Related Entries Specified in the PDB File" available for 4P59)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 7)

Sites (5, 5)

SS Bonds (29, 29)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (56, 56)

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