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(-) Description

Title :  HER3 EXTRACELLULAR DOMAIN IN COMPLEX WITH FAB FRAGMENT OF MOR09825
 
Authors :  E. R. Sprague
Date :  15 Mar 14  (Deposition) - 16 Apr 14  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,H,L
Keywords :  Her3 Receptor, Therapeutic Antibody, Fab Fragment, Anti-Her3, Signaling Protein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. P. Garner, C. U. Bialucha, E. R. Sprague, J. T. Garrett, Q. Sheng, S. Li, O. Sineshchekova, P. Saxena, C. R. Sutton, D. Chen, Y. Chen, H. Wang, J. Liang, R. Das, R. Mosher, J. Gu, A. Huang, N. Haubst, C. Zehetmeier, M. Haberl, W. Elis, C. Kunz, A. B. Heidt, K. Herlihy, J. Murtie, A. Schuller, C. L. Arteaga, W. R. Sellers, S. A. Ettenberg
An Antibody That Locks Her3 In The Inactive Conformation Inhibits Tumor Growth Driven By Her2 Or Neuregulin.
Cancer Res. V. 73 6024 2013
PubMed-ID: 23928993  |  Reference-DOI: 10.1158/0008-5472.CAN-13-1198

(-) Compounds

Molecule 1 - RECEPTOR TYROSINE-PROTEIN KINASE ERBB-3
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293
    Expression System Taxid9606
    GeneERBB3, HER3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTO-ONCOGENE-LIKE PROTEIN C-ERBB-3,TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER3
 
Molecule 2 - MOR09825 FAB FRAGMENT HEAVY CHAIN
    ChainsH
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 3 - MOR09825 FAB FRAGMENT LIGHT CHAIN
    ChainsL
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit AHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:57 , ARG A:81 , ARG A:103 , CYS A:243 , PHE A:244 , ALA A:245 , CYS A:246 , ASN A:250 , GLY A:253binding site for Poly-Saccharide residues NAG A 703 through NAG A 704 bound to ASN A 250
2AC2SOFTWAREASN A:353binding site for Poly-Saccharide residues NAG A 705 through NAG A 706 bound to ASN A 353
3AC3SOFTWAREHIS A:405 , MET A:406 , HIS A:407 , ASN A:408 , SER A:440 , PRO A:512binding site for Mono-Saccharide NAG A 701 bound to ASN A 408
4AC4SOFTWAREARG A:388 , ASN A:414binding site for Mono-Saccharide NAG A 707 bound to ASN A 414
5AC5SOFTWAREPRO A:404 , LEU A:436 , ASN A:437 , GLN A:461 , SER L:76binding site for Mono-Saccharide NAG A 702 bound to ASN A 437

(-) SS Bonds  (29, 29)

Asymmetric/Biological Unit
No.Residues
1A:29 -A:56
2A:156 -A:183
3A:186 -A:194
4A:190 -A:202
5A:210 -A:218
6A:214 -A:226
7A:227 -A:235
8A:231 -A:243
9A:246 -A:255
10A:259 -A:286
11A:290 -A:301
12A:305 -A:320
13A:323 -A:327
14A:331 -A:354
15A:463 -A:493
16A:500 -A:509
17A:504 -A:517
18A:520 -A:529
19A:533 -A:549
20A:552 -A:565
21A:556 -A:573
22A:576 -A:585
23A:589 -A:610
24A:613 -A:621
25A:617 -A:629
26H:22 -H:96
27H:144 -H:200
28L:23 -L:88
29L:134 -L:194

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Pro H:41 -Gly H:42
2Pro H:130 -Ser H:131
3Phe H:150 -Pro H:151
4Glu H:152 -Pro H:153
5Ser L:7 -Pro L:8
6Phe L:94 -Pro L:95
7Tyr L:140 -Pro L:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P59)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P59)

(-) Exons   (0, 0)

(no "Exon" information available for 4P59)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:592
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............eee..eeee........hhhhhh.ee...eeee.....ee......ee....hhhh.eeeeee............ee......ee...eeee............hhhhh.......ee.........................................................................eee..eee......eeee....eeee.....eee..eee.......eee..eee......eeeeee..eeeeee.......ee...............hhhhhh...ee...eeehhhhhh..........hhhhhhhhh...ee...eee.........hhhhhh..ee...........eeee..............ee....eeee...........hhhhhh.......eeee...hhhhhhhhh.........................ee....ee...........eee....eee...........................eee..eee....eeeee..eeeeeee.....eee................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p59 A  26 QAVCPGTLNGYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLG 631
                                    35|       59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629  
                                    35|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                     50                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     

Chain H from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...ee....eeeeeeeee..hhhhh.eeeeee......eeeeee......eee.......eeeeee....eeeeeee..hhhhheeeeeeee....eeee...eeeee........eeeee.....eeeeeeeeee....eeeee.hhh....eee...ee.....eeeeeeeeehhhhhh...eeeeeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p59 H   2 VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAINSQGKSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARWGDEGFDIWGQGTLVTVSSASTKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP 217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131||     147       157       167       177       187       197       207       217
                                                                                                                                                            132|                                                                              
                                                                                                                                                             139                                                                              

Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee......ee...eeeee.......eeeee..hhhhhhh..eeeeeeeeee....eeeeeee..ee....ee............eeeeeeeeehhhhhhh..eeeeeeee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p59 L   1 DIQMTQSPSSLSASVGDRVTITCRASQGISNWLAWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAVYYCQQYSSFPTTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P59)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P59)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P59)

(-) Gene Ontology  (56, 56)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe L:94 - Pro L:95   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERBB3_HUMAN | P218601m6b 2l9u 3kex 3lmg 3p11 4leo 4otw 4riw 4rix 4riy 5cus

(-) Related Entries Specified in the PDB File

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